Pre_GI: BLASTP Hits

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Query: NC_004631:948054:988990 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 988990, End: 989910, Length: 921

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:948029:986665986665987585921Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,putative inner membrane transporter yedA2e-134478
NC_011149:1110642:113139511313951132315921Salmonella enterica subsp. enterica serovar Agona str. SL483,carboxylate/amino acid/amine transporter3e-134478
NC_016831:1865681:186568118656811866601921Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-133476
NC_017046:2026672:202989220298922030818927Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein1e-133476
NC_016857:2027311:203053120305312031457927Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74inner membrane transporter yedA1e-133476
NC_016810:2027311:203053720305372031457921Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-133475
NC_016856:2085283:208437420843742085294921Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein2e-133475
NC_016863:2029340:203256620325662033486921Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein2e-133475
NC_011205:1227373:124520912452091246129921Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-132472
NC_015761:1970042:197327419732741974194921Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-127454
CU928160:2091249:209124920912492092169921Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; putative inner membrane protein7e-115413
NC_010498:1210145:122891112289111229831921Escherichia coli SMS-3-5, complete genomecarboxylate/amino acid/amine transporter7e-115413
NC_011415:2248417:224750822475082248428921Escherichia coli SE11 chromosome, complete genomehypothetical protein7e-115413
NC_011741:2091249:209124920912492092169921Escherichia coli IAI1 chromosome, complete genomehypothetical protein7e-115413
NC_013716:2139952:214104121410412141961921Citrobacter rodentium ICC168, complete genomehypothetical protein1e-112405
NC_011740:1991941:199194119919411992861921Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein; putative inner membrane protein6e-111400
AC_000091:2027648:203167620316762032596921Escherichia coli W3110 DNA, complete genomepredicted inner membrane protein7e-108390
NC_010473:2119480:211857121185712119491921Escherichia coli str. K-12 substr. DH10B, complete genomepredicted inner membrane protein7e-108390
NC_000913:2028472:202756320275632028483921Escherichia coli K12, complete genomepredicted inner membrane protein7e-108390
NC_009801:2159123:215912321591232160043921Escherichia coli E24377A, complete genomecarboxylate/amino acid/amine transporter7e-108390
NC_009800:2049346:204934620493462050266921Escherichia coli HS, complete genomecarboxylate/amino acid/amine transporter7e-108390
NC_012759:1920955:192004619200461920966921Escherichia coli BW2952 chromosome, complete genomehypothetical protein7e-108390
NC_012947:1769438:180687818068781807798921Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein7e-108390
NC_013008:2561586:256067725606772561597921Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein7e-108390
CP002516:1902431:192390819239081924837930Escherichia coli KO11, complete genomecarboxylate/amino acid/amine transporter3e-103374
CP002185:2181936:218101821810182181947930Escherichia coli W, complete genomepredicted inner membrane protein3e-103374
NC_016902:1902431:192390819239081924837930Escherichia coli KO11FL chromosome, complete genomecarboxylate/amino acid/amine transporter3e-103374
NC_016612:5208936:521028652102865211197912Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative DMT superfamily transporter inner membrane protein3e-100365
NC_015663:4906652:490774749077474908658912Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative DMT superfamily transporter inner membrane protein7e-100363
NC_011283:1901229:192033319203331921244912Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein2e-98358
NC_021066:601029:619153619153620064912Raoultella ornithinolytica B6, complete genomeDMT superfamily transporter inner membrane protein1e-96352
NC_014306:3006028:300739930073993008316918Erwinia billingiae Eb661, complete genomecarboxylate/amino acid/amine transporter4e-83308
NC_016822:2201388:220579522057952206337543Shigella sonnei 53G, complete genomeputative DMT superfamily transporter inner membrane protein2e-60233
NC_016822:2201388:220541622054162205775360Shigella sonnei 53G, complete genomeputative DMT superfamily transporter inner membrane protein8e-39160
NC_008314:1955793:196031119603111961213903Ralstonia eutropha H16 chromosome 2, complete sequenceTransmembrane protein8e-27121
NC_014761:2248000:226086222608622261734873Oceanithermus profundus DSM 14977 chromosome, complete genomehypothetical protein4e-24112
NC_013947:1011899:1012447101244710140061560Stackebrandtia nassauensis DSM 44728 chromosome, complete genomepeptide methionine sulfoxide reductase8e-24111
NC_013132:3605317:360441936044193605336918Chitinophaga pinensis DSM 2588, complete genomeprotein of unknown function DUF6 transmembrane4e-23108
NC_015064:649201:652668652668653618951Acidobacterium sp. MP5ACTX9 chromosome, complete genomeprotein of unknown function DUF6 transmembrane4e-2099
NC_014655:1098428:111623111162311117145915Leadbetterella byssophila DSM 17132 chromosome, complete genomehypothetical protein1e-1377.4
NC_015589:2447132:246711424671142468061948Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehypothetical protein5e-1065.5
NC_014483:1376500:137660913766091377520912Paenibacillus polymyxa E681 chromosome, complete genomePermease of the drug/metabolite transporter (DMT) superfamily5e-0858.5
NC_002516:2306776:231289923128992313789891Pseudomonas aeruginosa PAO1, complete genomehypothetical protein9e-0651.2