Pre_GI: BLASTP Hits

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Query: NC_004631:531254:543995 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 543995, End: 544936, Length: 942

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:531208:543949543949544890942Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Inner membrane protein yfdC4e-157553
NC_003198:2453074:245977624597762460717942Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein4e-157553
NC_012125:1360593:137446613744661375407942Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein7e-157553
NC_011083:2542876:254957725495772550518942Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,inner membrane protein YfdC2e-156551
NC_011147:529458:542200542200543141942Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-156550
NC_006511:529424:542166542166543107942Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein4e-156550
NC_011274:2483038:248974124897412490682942Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein1e-155549
NC_011205:2621415:262597226259722626913942Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-155549
NC_011294:2492168:249887024988702499811942Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-155549
NC_016831:531404:544195544195545136942Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-155549
NC_013716:2898434:2902857290285729039991143Citrobacter rodentium ICC168, complete genomehypothetical protein3e-147521
NC_009436:3117661:312438731243873125328942Enterobacter sp. 638, complete genometransport2e-139495
CU928145:2655989:266427426642742665206933Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; putative inner membrane protein2e-136485
CP002185:2608000:261704826170482617980933Escherichia coli W, complete genomepredicted inner membrane protein2e-136485
NC_002655:3260500:326185632618563262788933Escherichia coli O157:H7 EDL933, complete genomeputative transport2e-136485
NC_002695:3189425:319190031919003192832933Escherichia coli O157:H7 str. Sakai, complete genomeputative transport2e-136485
NC_011750:2585015:258749025874902588422933Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-136485
CP002516:1475521:148787714878771488809933Escherichia coli KO11, complete genomeformate/nitrite transporter2e-136485
NC_011748:2655989:266427426642742665206933Escherichia coli 55989, complete genomeconserved hypothetical protein; putative inner membrane protein2e-136485
NC_011415:2732000:274042327404232741355933Escherichia coli SE11 chromosome, complete genomeputative transport protein2e-136485
NC_013361:3254000:326312132631213264053933Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-136485
NC_013941:2928000:293296629329662933898933Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-136485
NC_016902:1475521:148787714878771488809933Escherichia coli KO11FL chromosome, complete genomeformate/nitrite transporter2e-136485
NC_008563:2565876:256897925689792569911933Escherichia coli APEC O1, complete genomeputative transport protein3e-136484
NC_007946:2593500:259628925962892597221933Escherichia coli UTI89, complete genomeputative transport3e-136484
NC_011742:2489000:249211124921112493043933Escherichia coli S88 chromosome, complete genomehypothetical protein3e-136484
NC_012967:2409500:240974324097432410675933Escherichia coli B str. REL606 chromosome, complete genomeputative inner membrane protein5e-136484
NC_009800:2505872:250692125069212507853933Escherichia coli HS, complete genomehypothetical protein5e-136484
NC_007613:2376974:237918723791872380119933Shigella boydii Sb227, complete genomeputative transport1e-135483
NC_000913:2455037:246332324633232464255933Escherichia coli K12, complete genomepredicted inner membrane protein2e-135481
NC_010473:2548946:255508825550882556020933Escherichia coli str. K-12 substr. DH10B, complete genomepredicted inner membrane protein2e-135481
AC_000091:2462461:247074724707472471679933Escherichia coli W3110 DNA, complete genomepredicted inner membrane protein2e-135481
NC_012759:2342986:234912823491282350060933Escherichia coli BW2952 chromosome, complete genomeputative inner membrane protein2e-135481
NC_010658:2529033:253125525312552532187933Shigella boydii CDC 3083-94, complete genomehypothetical protein3e-135481
NC_015968:3277217:328402732840273284956930Enterobacter asburiae LF7a chromosome, complete genomeformate/nitrite transporter2e-134478
NC_015663:5253242:525990952599095260820912Enterobacter aerogenes KCTC 2190 chromosome, complete genomeformate/nitrite transporter3e-119428
NC_014306:3524980:352996835299683530885918Erwinia billingiae Eb661, complete genomePutative transport protein2e-105382
NC_014839:253961:295463295463296368906Pantoea sp. At-9b plasmid pPAT9B02, complete sequenceformate/nitrite transporter1e-104379
NC_015224:3291736:330078233007823301693912Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative inner membrane protein4e-103374
NC_012917:3198000:320294832029483203868921Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeformate/nitrite transporter7e-101367
NC_016818:1291665:130562513056251306542918Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeformate/nitrite transporter family protein1e-98359
NC_015061:1251905:127252312725231273440918Rahnella sp. Y9602 chromosome, complete genomeformate/nitrite transporter3e-97355
NC_020209:4312892:434655043465504347440891Pseudomonas poae RE*1-1-14, complete genomehypothetical protein2e-69262
NC_010501:1286971:129339112933911294287897Pseudomonas putida W619, complete genometransporter, formate/nitrite family3e-69262
NC_015873:2197412:221363522136352214492858Megasphaera elsdenii DSM 20460, complete genomeformate/nitrate transporter4e-40165
NC_014299:82584:132177132177133133957Halalkalicoccus jeotgali B3 plasmid 2, complete sequenceformate/nitrite transporter5e-2098.6
NC_007005:5500196:552150555215055522320816Pseudomonas syringae pv. syringae B728a, complete genomeFormate/nitrite transporter9e-0754.7
NC_005773:5310339:532528553252855326100816Pseudomonas syringae pv. phaseolicola 1448A, complete genomeFormate transporter3e-0652.8