Pre_GI: BLASTP Hits

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Query: NC_004631:4381724:4399091 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 4399091, End: 4399672, Length: 582

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:4368948:438617443861744386896723Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-113407
NC_012125:4481808:450147945014794502159681Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein4e-113406
NC_003198:4397074:441444144144414415022582Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-112403
NC_010102:4477836:449716344971634497942780Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein5e-33140
NC_016816:4232680:423336142333614234104744Pantoea ananatis LMG 5342, complete genomehypothetical protein8e-33139
NC_015567:313035:314780314780315496717Serratia sp. AS9 chromosome, complete genomehypothetical protein2e-27122
NC_014029:331919:349287349287350003717Yersinia pestis Z176003 chromosome, complete genomehypothetical protein3e-27121
NC_014121:398012:420610420610421353744Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-26119
NC_012779:305969:324506324506325228723Edwardsiella ictaluri 93-146, complete genomehypothetical protein7e-25113
NC_009832:4564752:456702845670284567747720Serratia proteamaculans 568, complete genomehypothetical protein1e-23109
NC_004547:611178:621156621156621848693Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein5e-1994
NC_013421:701005:736693736693737391699Pectobacterium wasabiae WPP163, complete genomehypothetical protein3e-1891.7
NC_009832:358291:360027360027360572546Serratia proteamaculans 568, complete genomehypothetical protein6e-1580.5
NC_009705:78000:929879298793670684Yersinia pseudotuberculosis IP 31758 plasmid_153kb, completehypothetical protein1e-0963.2
NC_002940:78392:792317923179968738Haemophilus ducreyi 35000HP, complete genomehypothetical protein3e-0961.6
NC_011750:1978801:200340720034072004126720Escherichia coli IAI39 chromosome, complete genomehypothetical protein6e-0960.5
NC_012691:779826:801775801775802461687Tolumonas auensis DSM 9187, complete genomehypothetical protein1e-0859.3
NC_014562:983398:991368991368992093726Pantoea vagans C9-1 chromosome, complete genomehypothetical protein9e-0650.1