Pre_GI: BLASTP Hits

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Query: NC_004631:4381724:4389128 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 4389128, End: 4389511, Length: 384

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:4397074:440447844044784404861384Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein9e-68254
NC_011147:4297513:430696643069664307280315Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-53207
NC_016832:4368948:437635243763524376615264Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-44176
NC_015761:4188250:4188250418825041978439594Salmonella bongori NCTC 12419, complete genomelarge repetitive protein2e-42170
NC_006905:4486433:449414444941444494533390Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein5e-27119
NC_012125:4481808:448951944895194489854336Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein7e-27119
NC_016831:4367000:437489643748964375231336Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein7e-27119
NC_003197:4551880:456008345600834560352270Salmonella typhimurium LT2, complete genomehypothetical protein6e-25112
NC_016810:4573172:458066345806634580932270Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein6e-25112
NC_016856:4563435:457291345729134573182270Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein6e-25112
NC_016857:4573173:458066445806644580933270Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein6e-25112
NC_016863:4513106:452051945205194520788270Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein6e-25112
NC_013508:343617:3455573455573536448088Edwardsiella tarda EIB202, complete genomehypothetical protein1e-1892
NC_010102:4477836:448554744855474485684138Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-1581.3
NC_017046:4571833:457932445793244579512189Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage protein1e-1065.1
NC_016860:4649274:465747746574774657665189Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-1065.1