Pre_GI: BLASTP Hits

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Query: NC_004631:3910451:3923021 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 3923021, End: 3923830, Length: 810

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:3900000:391181839118183912627810Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Lipopolysaccharide core biosynthesis protein rfaZ3e-156550
NC_003198:3924952:393752239375223938331810Salmonella enterica subsp. enterica serovar Typhi str. CT18,lipopolysaccharide core biosynthesis protein RfaZ3e-156550
NC_011080:3875320:388324438832443884053810Salmonella enterica subsp. enterica serovar Newport str. SL254,lipopolysaccharide core biosynthesis protein RfaZ4e-155547
NC_011149:3822000:383017538301753830984810Salmonella enterica subsp. enterica serovar Agona str. SL483,lipopolysaccharide core biosynthesis protein RfaZ4e-155547
NC_011094:3778000:378616137861613786970810Salmonella enterica subsp. enterica serovar Schwarzengrund strlipopolysaccharide core biosynthesis protein4e-155547
NC_011294:3782655:379190837919083792717810Salmonella enterica subsp. enterica serovar Enteritidis strlipopolysaccharide core biosynthesis protein4e-155547
NC_003197:3902500:391080739108073911616810Salmonella typhimurium LT2, complete genomelipopolysaccharide core biosynthetic protein7e-155546
NC_016810:3923988:393212139321213932930810Salmonella enterica subsp. enterica serovar Typhimurium strlipopolysaccharide core biosynthesis protein RfaZ7e-155546
NC_016856:3916500:392449939244993925308810Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Slipopolysaccharide core biosynthesis protein7e-155546
NC_016857:3924000:393212239321223932931810Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74lipopolysaccharide core biosynthesis protein7e-155546
NC_016860:3925500:393370339337033934512810Salmonella enterica subsp. enterica serovar Typhimurium strlipopolysaccharide core biosynthesis protein7e-155546
NC_016863:3864000:387210638721063872915810Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1lipopolysaccharide core biosynthesis protein7e-155546
NC_017046:3923000:393094839309483931757810Salmonella enterica subsp. enterica serovar Typhimurium str. 798lipopolysaccharide core biosynthesis protein RfaZ7e-155546
NC_006905:3845000:385310838531083853917810Salmonella enterica subsp. enterica serovar Choleraesuis strlipopolysaccharide core biosynthesis6e-155546
NC_012125:3840000:384796338479633848772810Salmonella enterica subsp. enterica serovar Paratyphi C strainlipopolysaccharide core biosynthesis protein6e-155546
NC_011083:3915500:392381739238173924626810Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,lipopolysaccharide core biosynthesis protein RfaZ7e-155546
NC_016831:3875134:388686638868663887675810Salmonella enterica subsp. enterica serovar Gallinarum/pullorumlipopolysaccharide core biosynthesis protein RfaZ2e-154545
NC_010102:3851500:385975438597543860563810Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein9e-154542
NC_011147:3686500:369442836944283695237810Salmonella enterica subsp. enterica serovar Paratyphi A strlipopolysaccharide core biosynthesis protein1e-153542
NC_006511:3690828:369875136987513699560810Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCClipopolysaccharide core biosynthesis protein RfaZ1e-153542
NC_010067:3846962:385827538582753859084810Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-143508
NC_015761:3611993:361990836199083620717810Salmonella bongori NCTC 12419, complete genomelipopolysaccharide core biosynthesis protein RfaZ4e-143507
NC_020063:97436:106635106635107444810Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein3e-118424
NC_011740:4007000:401490840149084015717810Escherichia fergusonii ATCC 35469, complete genomelipopolysaccharide core biosynthesis protein7e-112403
NC_010473:3883701:389494538949453895796852Escherichia coli str. K-12 substr. DH10B, complete genomelipopolysaccharide core biosynthesis protein2e-110398
NC_000913:3786124:379736837973683798219852Escherichia coli K12, complete genomelipopolysaccharide core biosynthesis protein2e-110398
AC_000091:3827856:384021938402193841070852Escherichia coli W3110 DNA, complete genomelipopolysaccharide core biosynthesis protein2e-110398
NC_012759:3675396:368569436856943686545852Escherichia coli BW2952 chromosome, complete genomelipopolysaccharide core biosynthesis protein2e-110398
NC_011601:4036590:404579440457944046567774Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomelipopolysaccharide core biosynthesis protein1e-108392
NC_013716:4408201:442069744206974421506810Citrobacter rodentium ICC168, complete genomelipopolysaccharide core biosynthesis protein RfaZ8e-103373
NC_002947:3404000:340464734046473405480834Pseudomonas putida KT2440, complete genomelipopolysaccharide core biosynthesis protein, putative7e-1994.4
NC_017986:5509569:550956955095695510285717Pseudomonas putida ND6 chromosome, complete genomehypothetical protein1e-1894
NC_010501:3013103:302018930201893020977789Pseudomonas putida W619, complete genomelipopolysaccharide core biosynthesis domain protein7e-1787.8