Pre_GI: BLASTP Hits

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Query: NC_004631:3841975:3854826 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 3854826, End: 3855149, Length: 324

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011094:3853036:385962438596243859947324Salmonella enterica subsp. enterica serovar Schwarzengrund strDNA-binding protein5e-57219
NC_011080:3941909:394849739484973948820324Salmonella enterica subsp. enterica serovar Newport str. SL254,DNA-binding protein5e-57219
NC_003198:3855157:386933638693363869659324Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative DNA-binding protein5e-57219
NC_006511:3759550:376726937672693767592324Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative DNA-binding protein3e-56216
NC_006905:3913988:391758039175803917903324Salmonella enterica subsp. enterica serovar Choleraesuis strputative helix-turn-helix protein3e-56216
NC_010102:3919999:392723139272313927554324Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-56216
NC_011147:3755725:376294837629483763271324Salmonella enterica subsp. enterica serovar Paratyphi A strDNA-binding protein3e-56216
NC_012125:3905782:391237039123703912693324Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA-binding protein3e-56216
NC_011149:3895921:390364939036493903972324Salmonella enterica subsp. enterica serovar Agona str. SL483,DNA-binding protein9e-56214
NC_003197:3971905:397913739791373979460324Salmonella typhimurium LT2, complete genomeputative DNA-binding protein4e-55212
NC_011083:3985618:399334639933463993669324Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,DNA-binding protein4e-55212
NC_016810:3993863:400045040004504000773324Salmonella enterica subsp. enterica serovar Typhimurium strputative DNA-binding protein4e-55212
NC_016856:3985597:399282939928293993152324Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative DNA-binding protein4e-55212
NC_016857:3993864:400045140004514000774324Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative DNA-binding protein4e-55212
NC_016860:3995445:400203340020334002356324Salmonella enterica subsp. enterica serovar Typhimurium strDNA-binding protein4e-55212
NC_016863:3933848:394043639404363940759324Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative DNA-binding protein4e-55212
NC_012912:4167429:418443541844354184758324Dickeya zeae Ech1591, complete genometranscriptional regulator, XRE family6e-50195
NC_014562:3985500:400284740028474003170324Pantoea vagans C9-1 chromosome, complete genomePutative HTH-type transcriptional regulatory protein8e-48188
NC_011750:4390000:443710244371024437425324Escherichia coli IAI39 chromosome, complete genomeputative transcriptional regulator6e-46182
NC_002655:4653160:469762746976274697950324Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-45180
NC_002695:4584177:462864446286444628967324Escherichia coli O157:H7 str. Sakai, complete genomeputative DNA-binding protein2e-45180
NC_011353:4688000:473174847317484732071324Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeDNA-binding protein2e-45180
NC_013008:4643825:468778946877894688112324Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-45180
NC_013941:4470932:451613745161374516460324Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDNA-binding protein2e-45180
NC_014837:1144500:116031411603141160637324Pantoea sp. At-9b chromosome, complete genomeXRE family transcriptional regulator4e-45179
NC_019940:3518670:353201235320123532329318Thioflavicoccus mobilis 8321 chromosome, complete genometranscriptional regulator1e-22105
NC_007512:2024880:202975120297512030074324Pelodictyon luteolum DSM 273, complete genometranscriptional regulator, XRE family4e-22103
NC_015276:3829059:383324238332423833547306Marinomonas mediterranea MMB-1 chromosome, complete genometranscriptional regulator, XRE family1e-1995.1
NC_015559:3645181:366265436626543662959306Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeXRE family transcriptional regulator4e-1993.2
NC_016616:2644883:265253126525312652830300Dechlorosoma suillum PS chromosome, complete genomeputative transcriptional regulator1e-1892
NC_008577:1455000:146035414603541460659306Shewanella sp. ANA-3 chromosome 1, complete sequencetranscriptional regulator-like protein2e-1787.4
NC_010943:1332243:136553413655341365839306Stenotrophomonas maltophilia K279a, complete genomehypothetical protein4e-1786.7
NC_008740:2989856:299940129994012999724324Marinobacter aquaeolei VT8, complete genomehelix-turn-helix domain protein5e-1786.7
NC_020829:2152000:216316121631612163463303Pseudomonas denitrificans ATCC 13867, complete genomeDNA-binding protein1e-1685.5
NC_015422:1694363:170732417073241707626303Alicycliphilus denitrificans K601 chromosome, complete genomeXRE family transcriptional regulator1e-1685.1
NC_008782:2781229:279929827992982799600303Acidovorax sp. JS42, complete genometranscriptional regulator1e-1685.1
NC_015388:2211828:222315922231592223500342Desulfobacca acetoxidans DSM 11109 chromosome, complete genometranscriptional regulator, XRE family8e-1372.4
NC_007512:944941:970508970508970810303Pelodictyon luteolum DSM 273, complete genometranscriptional regulator, XRE family3e-1270.5
NC_017269:303500:318521318521318835315Vibrio cholerae LMA3984-4 chromosome II, complete sequencehypothetical protein9e-0958.9
NC_002506:370629:415268415268415582315Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completehypothetical protein9e-0958.9
NC_009456:787322:839109839109839423315Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein9e-0958.9
NC_012583:361241:424519424519424833315Vibrio cholerae O395 chromosome chromosome II, complete sequencevirulence gene repressor RsaL9e-0958.9
NC_012667:931390:970665970665970979315Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein9e-0958.9
NC_016945:370471:415087415087415401315Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein9e-0958.9
NC_007760:3655433:366449936644993664813315Anaeromyxobacter dehalogenans 2CP-C, complete genometranscriptional regulator, XRE family8e-0958.9
NC_008757:206036:218164218164218451288Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completeputative transcriptional regulator4e-0857
NC_010087:319063:363326363326363613288Burkholderia multivorans ATCC 17616 chromosome 3, completetranscriptional regulator, XRE family8e-0752.4
NC_010801:550270:561245561245561532288Burkholderia multivorans ATCC 17616 chromosome 3, completeputative transcriptional regulator8e-0752.4
NC_013889:1623697:163974916397491640033285Thioalkalivibrio sp. K90mix chromosome, complete genometranscriptional regulator, XRE family1e-0652
NC_014960:2371989:238808623880862388379294Anaerolinea thermophila UNI-1, complete genomeXre family DNA-binding protein6e-0649.7
NC_010655:1606901:163224316322431632686444Akkermansia muciniphila ATCC BAA-835, complete genometranscriptional regulator, XRE family7e-0649.3
NC_014216:1197704:121671612167161217003288Desulfurivibrio alkaliphilus AHT2 chromosome, complete genometranscriptional regulator, XRE family7e-0649.3