Pre_GI: BLASTP Hits

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Query: NC_004631:3841975:3848293 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 3848293, End: 3848751, Length: 459

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:3913988:392520239252023925660459Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein2e-84310
NC_003198:3855157:386280338628033863261459Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-84310
NC_016857:3993864:400684940068494007316468Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein2e-84310
NC_012125:3905782:391999339199933920460468Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-84310
NC_010102:3919999:393362939336293934081453Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-83306
NC_011149:3895921:391004739100473910499453Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein3e-83306
NC_003197:3971905:398553539855353985987453Salmonella typhimurium LT2, complete genomeputative inner membrane protein3e-83306
NC_006511:3759550:377366737736673774119453Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein3e-83306
NC_011083:3985618:399974439997444000196453Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein3e-83306
NC_011080:3941909:395611939561193956571453Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein3e-83306
NC_011094:3853036:386724738672473867699453Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-83306
NC_016863:3933848:394683439468343947286453Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein3e-83306
NC_016860:4055117:409064640906464091098453Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-83306
NC_016856:3985597:399922739992273999679453Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein3e-83306
NC_016810:3993863:400684840068484007300453Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-83306
NC_011147:3755725:376934637693463769798453Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-83306
NC_017046:3991551:400567640056764006119444Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein3e-81300
NC_011353:4688000:473218747321874732639453Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein4e-71266
NC_011601:4096427:414205641420564142508453Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein4e-71266
NC_013008:4643825:468822846882284688680453Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-71266
NC_002655:4653160:469806646980664698545480Escherichia coli O157:H7 EDL933, complete genomehypothetical protein3e-71266
NC_002695:4584177:462908346290834629562480Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-71266
NC_013941:4470932:451657645165764517055480Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein3e-71266
NC_011750:4390000:443754144375414437993453Escherichia coli IAI39 chromosome, complete genomehypothetical protein8e-71265
NC_009792:4693152:471733047173304717782453Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-70263
NC_004337:3590323:390900139090013909480480Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-70263
NC_021066:4177217:419037041903704190822453Raoultella ornithinolytica B6, complete genomehypothetical protein4e-56216
NC_013716:4306695:434043943404394340801363Citrobacter rodentium ICC168, complete genome6e-54209
NC_014837:1144500:114731011473101147810501Pantoea sp. At-9b chromosome, complete genomehypothetical protein3e-40163
NC_013956:1207500:121128312112831211789507Pantoea ananatis LMG 20103 chromosome, complete genomeYicN1e-38158
NC_014562:469154:474383474383474886504Pantoea vagans C9-1 chromosome, complete genomeUncharacterized protein yicN5e-37153
NC_012779:2957000:297935629793562979841486Edwardsiella ictaluri 93-146, complete genomehypothetical protein7e-37152
NC_016816:3373950:338507333850733385564492Pantoea ananatis LMG 5342, complete genomeinner membrane protein YicN5e-36149
NC_009381:1783886:181311118131111813560450Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein6e-2199.8
NC_020064:3609844:365082336508233651269447Serratia marcescens FGI94, complete genomeProtein of unknown function (DUF1198)1e-1788.6