Pre_GI: BLASTP Hits

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Query: NC_004631:3841975:3841975 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 3841975, End: 3842988, Length: 1014

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:3855157:3856485385648538574981014Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein0704
NC_011149:3895921:3915731391573139167441014Salmonella enterica subsp. enterica serovar Agona str. SL483,DeoX0702
NC_006905:3913988:3930885393088539318981014Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein0701
NC_011147:3755725:3775108377510837761211014Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein0701
NC_006511:3759550:3779429377942937804421014Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein0701
NC_010102:3919999:3939392393939239404051014Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein0700
NC_003197:3971905:3991219399121939922321014Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein0700
NC_011083:3985618:4005428400542840064411014Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,DeoX0700
NC_016810:3993863:4012531401253140135441014Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein0700
NC_016856:3985597:4004911400491140059241014Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein0700
NC_016857:3993864:4012532401253240135451014Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein0700
NC_016860:4055117:4096330409633040973431014Salmonella enterica subsp. enterica serovar Typhimurium strDeoX0700
NC_016863:3933848:3952518395251839535311014Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein0700
NC_017046:3991551:4011359401135940123721014Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein0700
NC_012125:3905782:3925677392567739266901014Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein0698
NC_011094:3853036:3873010387301038740231014Salmonella enterica subsp. enterica serovar Schwarzengrund strDeoX0697
NC_011080:3941909:3961803396180339628161014Salmonella enterica subsp. enterica serovar Newport str. SL254,DeoX0695
CP002797:4603787:4630741463074146317541014Escherichia coli NA114, complete genomeHypothetical protein2e-174612
NC_008253:3122148:3148065314806531490781014Escherichia coli 536, complete genomeputative cytoplasmic protein4e-174610
NC_004431:279868:3040073040073050201014Escherichia coli CFT073, complete genomePutative cytoplasmic protein7e-173606
NC_021064:1789980:1798682179868217996981017Propionibacterium avidum 44067, complete genomehypothetical protein2e-108392
NC_020209:1949500:1951893195189319529271035Pseudomonas poae RE*1-1-14, complete genomecytoplasmic protein5e-97354
NC_011745:333061:339839339839340378540Escherichia coli ED1a chromosome, complete genomeDeoxyribose specific mutarotase (partial)2e-87322