Pre_GI: BLASTP Hits

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Query: NC_004631:3030580:3046615 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 3046615, End: 3047160, Length: 546

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:3020000:303525530352553035800546Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Isopentenyl-diphosphate Delta-isomerase2e-105380
NC_003198:3042000:306112030611203061665546Salmonella enterica subsp. enterica serovar Typhi str. CT18,isopentenyl-diphosphate delta-isomerase2e-105380
NC_011083:3171171:318978731897873190332546Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,isopentenyl-diphosphate delta-isomerase2e-104377
NC_013716:5201097:520562552056255206170546Citrobacter rodentium ICC168, complete genomeisopentenyl-diphosphate delta-isomerase2e-81301
NC_020181:4800298:480192248019224802476555Enterobacter aerogenes EA1509E, complete genomeIsopentenyl-diphosphate delta-isomerase4e-78290
NC_016612:477407:501759501759502307549Klebsiella oxytoca KCTC 1686 chromosome, complete genomeisopentenyl-diphosphate delta-isomerase3e-77287
NC_011283:785973:790648790648791202555Klebsiella pneumoniae 342 chromosome, complete genomeisopentenyl-diphosphate delta-isomerase7e-77286
NC_014121:4299500:432552443255244326066543Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeisopentenyl-diphosphate delta-isomerase5e-65246
NC_020064:1611820:161946716194671620012546Serratia marcescens FGI94, complete genomeisopentenyl-diphosphate delta-isomerase5e-48190
NC_006087:2439252:244433524443352444892558Leifsonia xyli subsp. xyli str. CTCB07, complete genomeisopentenyl-diphosphate delta-isomerase8e-44176
NC_016789:1805503:181121218112121811763552Corynebacterium diphtheriae PW8 chromosome, complete genomeisopentenyl-diphosphate delta-isomerase4e-43173
NC_016801:1782401:178811017881101788661552Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeisopentenyl-diphosphate delta-isomerase9e-43172
NC_016802:1709840:172077917207791721330552Corynebacterium diphtheriae HC02 chromosome, complete genomeisopentenyl-diphosphate delta-isomerase1e-42172
NC_002935:1763886:177152117715211772072552Corynebacterium diphtheriae NCTC 13129, complete genomeisopentenyl-diphosphate delta-isomerase2e-42171
NC_016782:1745374:175631317563131756864552Corynebacterium diphtheriae 241 chromosome, complete genomeisopentenyl-diphosphate delta-isomerase2e-42171
NC_016783:1758319:176402817640281764579552Corynebacterium diphtheriae INCA 402 chromosome, complete genomeisopentenyl-diphosphate delta-isomerase2e-42171
NC_016786:1751204:175691317569131757464552Corynebacterium diphtheriae HC01 chromosome, complete genomeisopentenyl-diphosphate delta-isomerase2e-42171
NC_016787:1726978:173268717326871733238552Corynebacterium diphtheriae HC03 chromosome, complete genomeisopentenyl-diphosphate delta-isomerase2e-42171
NC_016788:1730458:173616717361671736718552Corynebacterium diphtheriae HC04 chromosome, complete genomeisopentenyl-diphosphate delta-isomerase2e-42171
NC_016790:1702856:170856517085651709116552Corynebacterium diphtheriae VA01 chromosome, complete genomeisopentenyl-diphosphate delta-isomerase2e-42171
NC_016799:1787687:179620317962031796754552Corynebacterium diphtheriae 31A chromosome, complete genomeisopentenyl-diphosphate delta-isomerase2e-42171
NC_015635:1906790:1906790190679019084601671Microlunatus phosphovorus NM-1, complete genomeisopentenyl-diphosphate delta-isomerase/polyprenyl diphosphate synthase3e-38157
NC_013169:1410384:142725314272531427795543Kytococcus sedentarius DSM 20547, complete genomeisopentenyl-diphosphate delta-isomerase3e-33141
NC_014830:3870000:388680738868073887445639Intrasporangium calvum DSM 43043 chromosome, complete genomeisopentenyl-diphosphate delta-isomerase2e-32138
NC_013508:3593000:359637835963783596899522Edwardsiella tarda EIB202, complete genomeputative isopentenyldiphosphate isomerase5e-21100
NC_012779:3652737:365985336598533660371519Edwardsiella ictaluri 93-146, complete genomeisopentenyl-diphosphate delta-isomerase, putative4e-2097.4
NC_010801:238430:262604262604263134531Burkholderia multivorans ATCC 17616 chromosome 3, completeisopentenyl-diphosphate delta-isomerase1e-1892.8
NC_018012:2159814:217075721707572171329573Thiocystis violascens DSM 198 chromosome, complete genomeisopentenyl-diphosphate delta-isomerase1e-1789.4
NC_014820:1618606:161797716179771618609633Cenarchaeum symbiosum A, complete genomeisopentenyl-diphosphate delta-isomerase1e-1789.4
NC_013202:1492434:149493514949351495546612Halomicrobium mukohataei DSM 12286, complete genomeIsopentenyl-diphosphate Delta-isomerase1e-1582.8
NC_010001:1884500:188666918866691887664996Clostridium phytofermentans ISDg, complete genomeNUDIX hydrolase2e-1065.9
NC_009617:1487110:149324314932431493821579Clostridium beijerinckii NCIMB 8052 chromosome, complete genome2e-0962
NC_013222:2795919:281124528112452811793549Robiginitalea biformata HTCC2501, complete genomeHydrolase of MutT (Nudix) family protein6e-0960.5
NC_015164:1877981:189039018903901890890501Bacteroides salanitronis DSM 18170 chromosome, complete genomeNUDIX hydrolase8e-0960.1
NC_016629:3396500:340510634051063405669564Desulfovibrio africanus str. Walvis Bay chromosome, completeNUDIX hydrolase3e-0858.2
NC_009439:794498:814201814201814737537Pseudomonas mendocina ymp, complete genomeNUDIX hydrolase9e-0753.1
NC_007907:4926548:493094149309414931462522Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-0652.8
NC_001263:72681:801228012280637516Deinococcus radiodurans R1 chromosome 1, complete sequenceMutT/nudix family protein5e-0650.8