Pre_GI: BLASTP Hits

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Query: NC_004631:3030580:3035273 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 3035273, End: 3035872, Length: 600

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:3042000:304936630493663049965600Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein4e-105380
NC_016832:3020000:302391330239133024545633Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-105379
NC_011083:3171171:317508031750803175712633Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,YfdX protein7e-103372
NC_011751:2768864:278635127863512786983633Escherichia coli UMN026 chromosome, complete genomehypothetical protein5e-34144
NC_008563:2610499:262757126275712628206636Escherichia coli APEC O1, complete genomehypothetical protein7e-34143
NC_011742:2533500:255066625506662551301636Escherichia coli S88 chromosome, complete genomehypothetical protein7e-34143
NC_013941:2928000:296297029629702963605636Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein7e-34143
NC_011601:2614691:265017926501792650811633Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein7e-34143
NC_011353:3276734:332601633260163326651636Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein7e-34143
NC_011745:2751437:276850927685092769141633Escherichia coli ED1a chromosome, complete genomehypothetical protein7e-34143
NC_010468:1412791:141668414166841417316633Escherichia coli ATCC 8739, complete genomehypothetical protein2e-33142
NC_010658:2529033:254846425484642549096633Shigella boydii CDC 3083-94, complete genomehypothetical protein2e-33142
NC_009801:2639787:265727626572762657908633Escherichia coli E24377A, complete genomehypothetical protein2e-33142
NC_007606:2353098:237099623709962371628633Shigella dysenteriae Sd197, complete genomehypothetical protein2e-33142
CP002516:1419413:142699914269991427631633Escherichia coli KO11, complete genomehypothetical protein2e-33142
NC_007613:2376974:239569923956992396331633Shigella boydii Sb227, complete genomehypothetical protein2e-33142
CP002185:2659628:267822626782262678858633Escherichia coli W, complete genomepredicted protein2e-33142
CU928160:2513000:253063725306372531269633Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein2e-33142
AP010958:2911741:294476429447642945396633Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein2e-33142
NC_016902:1419413:142699914269991427631633Escherichia coli KO11FL chromosome, complete genomehypothetical protein2e-33142
NC_013353:2911741:294476429447642945396633Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-33142
NC_012967:2409500:242799424279942428626633Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-33142
NC_012947:1363724:136761713676171368249633Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-33142
NC_011741:2513000:253063725306372531269633Escherichia coli IAI1 chromosome, complete genomehypothetical protein2e-33142
NC_009800:2505872:252517225251722525804633Escherichia coli HS, complete genomehypothetical protein2e-33142
NC_008258:2473000:249057024905702491193624Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-33141
NC_004741:2456297:247496824749682475591624Shigella flexneri 2a str. 2457T, complete genomehypothetical protein2e-33141
NC_007384:2587876:260693526069352607558624Shigella sonnei Ss046, complete genomehypothetical protein2e-33141
NC_004337:2478461:249683024968302497453624Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-33141
NC_016822:2678691:269775026977502698373624Shigella sonnei 53G, complete genomehypothetical protein2e-33141
NC_017328:2516000:253447225344722535095624Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-33141
NC_009648:3803622:384145338414533842115663Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein4e-33140
NC_008253:2499735:251720125172012517668468Escherichia coli 536, complete genomeYfdX protein precursor8e-32136
NC_012721:240000:240629240629241309681Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein4e-1374.7
NC_015381:3091500:309537030953703096050681Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein3e-1271.6
NC_013851:949973:956936956936957790855Allochromatium vinosum DSM 180 chromosome, complete genomehypothetical protein3e-0961.6