Pre_GI: BLASTP Hits

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Query: NC_004631:2366335:2370266 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 2370266, End: 2370406, Length: 141

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:598000:610695610695610835141Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-1891.7
NC_011149:588895:601865601865602080216Salmonella enterica subsp. enterica serovar Agona str. SL483,cation efflux system protein CusA4e-1890.1
NC_011094:688626:701942701942702157216Salmonella enterica subsp. enterica serovar Schwarzengrund strcation efflux system protein CusA7e-1889.4
NC_015663:2090442:2118124211812421212733150Enterobacter aerogenes KCTC 2190 chromosome, complete genomecation efflux system protein CusA5e-1683.2
NC_009778:4188000:4206746420674642098923147Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-1581.6
NC_016832:2363136:236706723670672367192126Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cation efflux system protein cusA1e-1581.6
NC_006511:2251022:225561822556182255899282Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative inner membrane proton/cation antiporter1e-1168.9
NC_011147:2247460:225080222508022251011210Salmonella enterica subsp. enterica serovar Paratyphi A str9e-1268.9
NC_010102:2495441:249885324988532499287435Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-1167.8
NC_011083:654479:667449667449667637189Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,cation efflux system protein CusA3e-1167.4
NC_011205:645591:664013664013664201189Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853cation efflux system protein CusA3e-1167.4
NC_003197:606048:618968618968619207240Salmonella typhimurium LT2, complete genome3e-1167.4
NC_011274:603901:616798616798617034237Salmonella enterica subsp. enterica serovar Gallinarum str. 287/913e-1167.4
NC_015733:5909821:5950852595085259540103159Pseudomonas putida S16 chromosome, complete genomeCzcA family heavy metal efflux protein3e-1167.4
NC_011080:610428:623427623427623684258Salmonella enterica subsp. enterica serovar Newport str. SL254,cation efflux system protein CusA3e-1167.4
NC_016831:2402893:240573224057322405911180Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein3e-1167
NC_016857:604792:618516618516618695180Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative transport protein3e-1167
NC_016863:606742:619721619721619900180Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transport protein3e-1167
NC_017046:604789:618513618513618692180Salmonella enterica subsp. enterica serovar Typhimurium str. 7983e-1167
NC_016856:606742:619737619737619901165Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein3e-1167
NC_016860:644095:657090657090657254165Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-1167
NC_009512:27783:2462824628277863159Pseudomonas putida F1, complete genomeheavy metal efflux pump, CzcA family4e-1166.6
NC_010170:4800000:4834829483482948379963168Bordetella petrii, complete genomeAcrB/AcrD/AcrF family protein5e-1166.6
NC_009659:1923925:1945984194598419491363153Janthinobacterium sp. Marseille chromosome, complete genomesilver efflux pump6e-1166.2
NC_009659:1050532:1054388105438810575403153Janthinobacterium sp. Marseille chromosome, complete genomeCzcA family heavy metal efflux protein6e-1166.2
NC_009138:519965:5362255362255392873063Herminiimonas arsenicoxydans, complete genomeouter membrane copper (silver) and drug transport protein (RND family) 45e-1166.2
NC_009138:1544835:1544835154483515478072973Herminiimonas arsenicoxydans, complete genomeouter membrane copper (silver) and drug transport protein (RND family)5e-1166.2
NC_002947:6123608:6140255614025561434133159Pseudomonas putida KT2440, complete genomeheavy metal RND efflux transporter, CzcA family8e-1165.9
NC_011274:603901:616798616798617034237Salmonella enterica subsp. enterica serovar Gallinarum str. 287/917e-1165.9
NC_011294:585500:598426598426598662237Salmonella enterica subsp. enterica serovar Enteritidis str7e-1165.9
NC_016810:604813:618456618456618692237Salmonella enterica subsp. enterica serovar Typhimurium str7e-1165.9
NC_008782:1308007:1308007130800713111263120Acidovorax sp. JS42, complete genomeheavy metal efflux pump, CzcA family4e-1063.5
NC_015726:2177783:2177783217778321809533171Cupriavidus necator N-1 chromosome 1, complete sequencecobalt-zinc-cadmium resistance efflux pump CzcB9e-1062.4
NC_018080:3088866:3116717311671731198663150Pseudomonas aeruginosa DK2 chromosome, complete genomeCzcA family heavy metal efflux protein2e-0961.2
NC_009439:2427120:2445697244569724488463150Pseudomonas mendocina ymp, complete genomeCzcA family heavy metal efflux protein6e-0959.7
NC_012968:1594954:1628234162823416313593126Methylotenera mobilis JLW8, complete genomeheavy metal efflux pump, CzcA family6e-0959.7
NC_010087:376918:3927223927223959283207Burkholderia multivorans ATCC 17616 chromosome 3, completeheavy metal efflux pump, CzcA family5e-0959.7
NC_013446:2820000:2853720285372028568903171Comamonas testosteroni CNB-2, complete genomeheavy metal efflux pump, CzcA family2e-0857.8
NC_008800:3955284:3956810395681039599413132Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative cation efflux system protein4e-0857
NC_015224:3820338:383778238377823838216435Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,Heavy metal efflux pump, CzcA family6e-0856.2
NC_015422:2858228:2868832286883228720113180Alicycliphilus denitrificans K601 chromosome, complete genomeCzcA family heavy metal efflux pump7e-0752.8
NC_008782:2857899:2866988286698828701673180Acidovorax sp. JS42, complete genomeheavy metal efflux pump, CzcA family8e-0752.4
NC_009720:5079048:5075884507588450790513168Xanthobacter autotrophicus Py2, complete genomeCzcA family heavy metal efflux protein1e-0652
NC_015422:3513689:3524618352461835277493132Alicycliphilus denitrificans K601 chromosome, complete genomeCzcA family heavy metal efflux pump1e-0652
NC_011992:2279752:2320634232063423237653132Acidovorax ebreus TPSY, complete genomeheavy metal efflux pump, CzcA family1e-0652
NC_014836:33278:3596335963390913129Desulfurispirillum indicum S5 chromosome, complete genomeheavy metal efflux pump, CzcA family2e-0651.2
NC_008782:1510000:1537816153781615409473132Acidovorax sp. JS42, complete genomeheavy metal efflux pump, CzcA family2e-0650.8
NC_008347:174000:1874661874661906363171Maricaulis maris MCS10, complete genomeputative cation efflux system transmembrane protein3e-0650.8
NC_011761:2131911:2172992217299221761053114Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeCzcA family heavy metal efflux pump4e-0650.4
NC_011206:2040000:2061034206103420641443111Acidithiobacillus ferrooxidans ATCC 53993, complete genomeheavy metal efflux pump, CzcA family4e-0650.4
NC_016616:2768053:2785081278508127882153135Dechlorosoma suillum PS chromosome, complete genomeheavy metal efflux pump3e-0650.4
NC_016616:1091606:1107711110771111108453135Dechlorosoma suillum PS chromosome, complete genomeheavy metal efflux pump3e-0650.4
NC_011757:1121262:1122512112251211256853174Methylobacterium chloromethanicum CM4, complete genomeheavy metal efflux pump, CzcA family3e-0650.4
NC_012988:1162838:1162838116283811660113174Methylobacterium extorquens DM4, complete genomeouter membrane copper/drug transport protein3e-0650.4
NC_016602:173314:1912011912011943203120Vibrio furnissii NCTC 11218 chromosome 1, complete sequencecation efflux system transmembrane protein4e-0650.1
NC_015740:2692023:2692023269202326951333111Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeheavy metal efflux pump CzcA5e-0649.7
NC_014394:738365:7562907562907594003111Gallionella capsiferriformans ES-2 chromosome, complete genomeheavy metal efflux pump, CzcA family7e-0649.3
NC_009434:3611738:3637032363703236401543123Pseudomonas stutzeri A1501, complete genomeheavy metal efflux pump CzcA8e-0649.3