Pre_GI: BLASTP Hits

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Query: NC_004631:1587000:1590117 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 1590117, End: 1590461, Length: 345

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:1378457:139072013907201391064345Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-51200
NC_010102:1388344:140058114005811400925345Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-51198
NC_011083:1761352:177074217707421771086345Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,cyanate transport7e-51198
NC_003197:1713259:172264017226401722984345Salmonella typhimurium LT2, complete genomeputative inner membrane protein7e-51198
NC_006905:1726416:173579917357991736143345Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein7e-51198
NC_011274:1544653:155690715569071557251345Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein7e-51198
NC_011294:1493849:150610115061011506445345Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein7e-51198
NC_012125:2143246:215549721554972155841345Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein7e-51198
NC_016810:1670112:167949316794931679837345Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-51198
NC_016831:1468691:147807214780721478416345Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein7e-51198
NC_016856:1723236:173261717326171732961345Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein7e-51198
NC_016857:1670112:167949316794931679837345Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein7e-51198
NC_016860:1710950:172033117203311720675345Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-51198
NC_016863:1671428:168080916808091681153345Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein7e-51198
NC_011149:1429523:148417114841711484515345Salmonella enterica subsp. enterica serovar Agona str. SL483,cyanate transport1e-50198
NC_011094:1683979:169336116933611693705345Salmonella enterica subsp. enterica serovar Schwarzengrund strcyanate transport2e-50197
NC_011205:1633353:164562316456231645967345Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853cyanate transport1e-49194
NC_011080:1709612:171899317189931719337345Salmonella enterica subsp. enterica serovar Newport str. SL254,cyanate transport3e-49193
NC_015761:1599000:160651516065151606871357Salmonella bongori NCTC 12419, complete genomehypothetical protein3e-41166
NC_016514:2476359:248382424838242484309486Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein3e-40163
NC_014618:4114004:411851541185154118850336Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein2e-37154
NC_017046:1669995:167937616793761679642267Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein8e-37152
NC_016832:1582273:158706715870671587333267Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-36149
NC_014121:1848971:186048418604841860816333Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative inner membrane protein2e-34144
NC_015663:2090442:211662721166272116971345Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein4e-33139
NC_020063:1051310:105792710579271058268342Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein3e-26117
NC_012997:4152938:417130041713004171755456Teredinibacter turnerae T7901, complete genomecold-shock DNA-binding domain protein3e-1270.5
NC_006138:2341975:234197523419752342589615Desulfotalea psychrophila LSv54, complete genomehypothetical protein3e-1270.5
NC_012108:3824977:383872138387213839374654Desulfobacterium autotrophicum HRM2, complete genomeputative cold-shock protein4e-1270.1
NC_018691:318662:333336333336333716381Alcanivorax dieselolei B5 chromosome, complete genomeCold-shock DNA-binding domain protein2e-1064.3
NC_015856:1733500:175381917538191754436618Collimonas fungivorans Ter331 chromosome, complete genomecold-shock DNA-binding domain-containing protein4e-1063.5
NC_012691:779826:779826779826780101276Tolumonas auensis DSM 9187, complete genomeprotein of unknown function DUF12945e-1063.2
NC_009654:1729159:174035317403531740628276Marinomonas sp. MWYL1, complete genomehypothetical protein5e-1063.2
NC_012778:1946924:196326519632651963534270Eubacterium eligens ATCC 27750, complete genomehypothetical protein2e-0857.8