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Query: NC_004631:1587000:1589856 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 1589856, End: 1589996, Length: 141

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:2143246:2155962215596221571881227Salmonella enterica subsp. enterica serovar Paratyphi C straineffector protein1e-2098.6
NC_010067:1300606:1307720130772013090001281Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-1272
NC_010102:1388344:1401046140104614022721227Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-2098.6
NC_003198:1378457:139118513911851391325141Salmonella enterica subsp. enterica serovar Typhi str. CT18,secreted effector J (pseudogene)1e-2098.6
NC_011094:1683979:1692014169201416932401227Salmonella enterica subsp. enterica serovar Schwarzengrund strsecreted effector protein8e-22102
NC_016863:1671428:1679462167946216806881227Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1secreted effector protein1e-2098.6
NC_016856:1723236:1731270173127017324961227Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssecreted effector protein1e-2098.6
NC_003197:1713259:1721293172129317225191227Salmonella typhimurium LT2, complete genomesecreted effector protein1e-2098.6
NC_016857:1670112:1678146167814616793721227Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74secreted effector protein1e-2098.6
NC_011080:1709612:1717646171764617188721227Salmonella enterica subsp. enterica serovar Newport str. SL254,secreted effector protein1e-2098.6
NC_011083:1761352:1769395176939517706211227Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,secreted effector protein1e-2098.6
NC_011149:1429523:1484636148463614858621227Salmonella enterica subsp. enterica serovar Agona str. SL483,secreted effector protein3e-21100
NC_016860:1710950:1718984171898417202101227Salmonella enterica subsp. enterica serovar Typhimurium strsecreted effector protein1e-2098.6
NC_011205:1633353:1646088164608816473141227Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853secreted effector protein1e-2098.6
NC_016810:1670112:1678146167814616793721227Salmonella enterica subsp. enterica serovar Typhimurium strtranslocated effector protein (SseJ)1e-2098.6
NC_017046:1669995:1678029167802916792551227Salmonella enterica subsp. enterica serovar Typhimurium str. 798translocated effector protein (SseJ)1e-2098.6
NC_016831:1468691:1476725147672514779511227Salmonella enterica subsp. enterica serovar Gallinarum/pullorumtranslocated effector protein (SseJ)1e-2098.6
NC_011294:1493849:1506566150656615077921227Salmonella enterica subsp. enterica serovar Enteritidis strtranslocated effector protein SseJ1e-2098.6
NC_011274:1544653:1557372155737215585981227Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91translocated effector protein SseJ1e-2098.6
NC_006905:1726416:1734452173445217356781227Salmonella enterica subsp. enterica serovar Choleraesuis strtranslocated effector: regulated by SPI-21e-2098.6