Pre_GI: BLASTP Hits

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Query: NC_004631:1091303:1105722 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 1105722, End: 1106117, Length: 396

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:1867456:187501518750151875410396Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein4e-73272
NC_006905:1961774:196936819693681969763396Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein3e-72269
NC_011094:1923870:193143019314301931825396Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-72269
NC_017046:1902788:191034819103481910743396Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein4e-72269
NC_016863:1905454:191301419130141913409396Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein4e-72269
NC_016857:1903426:191098619109861911381396Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein4e-72269
NC_016856:1957263:196482319648231965218396Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein4e-72269
NC_016810:1903426:191098619109861911381396Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-72269
NC_003197:1945858:195341819534181953813396Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein4e-72269
NC_016832:1090274:110469411046941105074381Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-70262
NC_011080:1944226:195180119518011952181381Salmonella enterica subsp. enterica serovar Newport str. SL254,putative cytoplasmic protein1e-69261
NC_011149:1236689:124681812468181247198381Salmonella enterica subsp. enterica serovar Agona str. SL483,putative cytoplasmic protein1e-69261
NC_016860:1943203:195077819507781951158381Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein5e-69259
NC_016831:1690811:169838116983811698761381Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein5e-69259
NC_011083:1993672:200124120012412001621381Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative cytoplasmic protein5e-69259
NC_011147:1057259:108232610823261082733408Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-67254
NC_011205:1391971:141394514139451414271327Salmonella enterica subsp. enterica serovar Dublin str. CT_020218531e-57221
NC_014618:4114004:411737241173724117767396Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein6e-38155
NC_021066:1778000:178756617875661787970405Raoultella ornithinolytica B6, complete genomehypothetical protein5e-35145
NC_020063:2449554:245807424580742458490417Enterobacteriaceae bacterium strain FGI 57, complete genomephage envelope protein2e-33140
NC_013941:1460144:146497214649721465376405Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-25115
AP010958:1339263:134614213461421346546405Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein2e-25114
NC_010468:2699000:271326527132652713669405Escherichia coli ATCC 8739, complete genomeprotein of unknown function DUF13982e-25114
CU928145:1300863:130774213077421308146405Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein2e-25114
AC_000091:1191353:121428012142801214684405Escherichia coli W3110 DNA, complete genomehypothetical protein2e-25114
NC_009800:1254409:125992112599211260325405Escherichia coli HS, complete genomehypothetical protein2e-25114
NC_009801:1296488:130336713033671303771405Escherichia coli E24377A, complete genomehypothetical protein2e-25114
CP002185:1298675:130555413055541305958405Escherichia coli W, complete genomehypothetical protein2e-25114
NC_011745:1287714:129500912950091295413405Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-25114
NC_011742:1221416:122994712299471230351405Escherichia coli S88 chromosome, complete genomehypothetical protein2e-25114
NC_008253:1228485:123567712356771236081405Escherichia coli 536, complete genomehypothetical protein YcgX2e-25114
NC_008563:1217804:122633512263351226739405Escherichia coli APEC O1, complete genomehypothetical protein2e-25114
NC_004431:1443968:145249314524931452897405Escherichia coli CFT073, complete genomeHypothetical protein ycgX2e-25114
NC_007946:1280508:128903912890391289443405Escherichia coli UTI89, complete genomehypothetical protein YcgX2e-25114
NC_011601:1315746:132176613217661322170405Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein2e-25114
NC_000913:1188999:121192612119261212330405Escherichia coli K12, complete genomehypothetical protein2e-25114
NC_011748:1300863:130774213077421308146405Escherichia coli 55989, complete genomehypothetical protein2e-25114
CP002516:2786000:279989027998902800294405Escherichia coli KO11, complete genomeprotein of unknown function DUF13982e-25114
NC_011750:1978801:199092119909211991325405Escherichia coli IAI39 chromosome, complete genomehypothetical protein1e-25114
NC_010498:1995500:200860420086042009008405Escherichia coli SMS-3-5, complete genomehypothetical protein1e-25114
NC_016902:2786000:279989027998902800294405Escherichia coli KO11FL chromosome, complete genomehypothetical protein2e-25114
NC_013364:1477248:150754415075441507948405Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-25114
NC_013361:1634226:163973116397311640135405Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-25114
NC_013353:1339263:134614213461421346546405Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-25114
NC_012967:1205985:121286412128641213268405Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-25114
NC_012947:2566754:258111925811192581523405Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-25114
NC_011751:1446073:145896814589681459372405Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-25114
NC_010473:1245284:125216712521671252571405Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein2e-25114
CU928160:1232510:123938912393891239793405Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein2e-25114
NC_011415:1273551:128043012804301280834405Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-25114
NC_011741:1232510:123938912393891239793405Escherichia coli IAI1 chromosome, complete genomehypothetical protein2e-25114
NC_012759:1093764:110064711006471101051405Escherichia coli BW2952 chromosome, complete genomehypothetical protein2e-25114
NC_010658:1193225:120236512023651202769405Shigella boydii CDC 3083-94, complete genomehypothetical protein3e-25113
NC_011748:1773642:178138417813841781794411Escherichia coli 55989, complete genomeconserved hypothetical protein; Qin prophage2e-1787.8
CU928145:1773642:178138417813841781794411Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; Qin prophage2e-1787.8
NC_011751:643976:664741664741665166426Escherichia coli UMN026 chromosome, complete genomehypothetical protein6e-1786.3
NC_011750:1565000:157568015756801576090411Escherichia coli IAI39 chromosome, complete genomehypothetical protein6e-1785.9
NC_011748:824367:840511840511840936426Escherichia coli 55989, complete genomeconserved hypothetical protein from phage origin7e-1785.9
CU928145:824367:840511840511840936426Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein from phage origin7e-1785.9
NC_000913:558920:578407578407578817411Escherichia coli K12, complete genomeDLP12 prophage; predicted protein1e-1685.5
NC_010473:623810:630999630999631409411Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted protein1e-1685.5
NC_010473:498252:517739517739518149411Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted protein1e-1685.5
AC_000091:558920:578407578407578817411Escherichia coli W3110 DNA, complete genomehypothetical protein1e-1685.5
NC_012759:461680:481167481167481577411Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage protein1e-1685.5
CP002185:1770815:177704117770411777451411Escherichia coli W, complete genomeQin prophage; predicted protein1e-1685.1
NC_010473:1712984:172469617246961725106411Escherichia coli str. K-12 substr. DH10B, complete genomeQin prophage; predicted protein1e-1685.1
CU928160:1668842:167506816750681675478411Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; Qin prophage1e-1685.1
AC_000091:1627049:163876116387611639171411Escherichia coli W3110 DNA, complete genomehypothetical protein1e-1685.1
NC_000913:1625500:163507116350711635481411Escherichia coli K12, complete genomeQin prophage; predicted protein1e-1685.1
NC_011741:1668842:167506816750681675478411Escherichia coli IAI1 chromosome, complete genomehypothetical protein1e-1685.1
NC_012759:1517500:152713015271301527540411Escherichia coli BW2952 chromosome, complete genomeQin prophage protein1e-1685.1
NC_011751:1859606:186694618669461867371426Escherichia coli UMN026 chromosome, complete genomehypothetical protein4e-1683.6
NC_013361:2138716:214612021461202146530411Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein6e-1682.8