Pre_GI: BLASTP Hits

Some Help

Query: NC_004631:1091303:1092939 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 1092939, End: 1093139, Length: 201

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:1090274:109188310918831092152270Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Phage integrase6e-33139
NC_003198:1867456:188799318879931888193201Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-32138
NC_016831:1690811:171438817143881714657270Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-30130
NC_011080:1944226:195729619572961957808513Salmonella enterica subsp. enterica serovar Newport str. SL254,6e-30129
NC_011094:1923870:1945403194540319464821080Salmonella enterica subsp. enterica serovar Schwarzengrund strphage integrase2e-29127
NC_012125:1897611:190354519035451904273729Salmonella enterica subsp. enterica serovar Paratyphi C strainphage integrase protein3e-29126
NC_003197:1945858:196702619670261967922897Salmonella typhimurium LT2, complete genome2e-27121
NC_016810:1903426:192459419245941925490897Salmonella enterica subsp. enterica serovar Typhimurium strIntegrase2e-27121
NC_016856:1957263:197843119784311979327897Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sintegrase2e-27121
NC_016857:1903426:192459419245941925490897Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative phage integrase protein2e-27121
NC_016863:1905454:192662219266221927518897Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative phage integrase protein2e-27121
NC_017046:1902788:192395719239571924853897Salmonella enterica subsp. enterica serovar Typhimurium str. 798Integrase2e-27121
NC_011083:1993672:201608920160892016943855Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,integrase1e-27121
NC_016860:1943203:196260919626091963463855Salmonella enterica subsp. enterica serovar Typhimurium strintegrase1e-27121
NC_012125:1897611:190945919094591909728270Salmonella enterica subsp. enterica serovar Paratyphi C strainphage integrase protein1e-27121
NC_011149:1236689:123668912366891237048360Salmonella enterica subsp. enterica serovar Agona str. SL483,integrase3e-27120
NC_006511:1063249:107544410754441075773330Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative phage integrase protein2e-27120
NC_011147:1057259:106945410694541069783330Salmonella enterica subsp. enterica serovar Paratyphi A str2e-27120
NC_010102:1137247:114318211431821144009828Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein8e-27119
NC_011080:1944226:1972465197246519735441080Salmonella enterica subsp. enterica serovar Newport str. SL254,phage integrase1e-26118
NC_011294:1220526:1226471122647112275501080Salmonella enterica subsp. enterica serovar Enteritidis strintegrase1e-26118
NC_010102:1137247:1149438114943811505171080Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-26118
NC_003198:1908238:1932482193248219335581077Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative integrase1e-25115
NC_011205:1391971:1399187139918714002661080Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853integrase7e-26115
NC_011205:1345511:1351456135145613525351080Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage integrase6e-26115
NC_008258:1873805:1886389188638918874651077Shigella flexneri 5 str. 8401, complete genomeputative phage integrase protein4e-25113
NC_016856:1957263:196927919692791969608330Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein1e-23108
NC_016857:1903426:191544219154421915771330Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein1e-23108
NC_017046:1902788:191480419148041915133330Salmonella enterica subsp. enterica serovar Typhimurium str. 7981e-23108
NC_011083:1993672:200564220056422006010369Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative cytoplasmic protein8e-24108
NC_003197:1945858:195783519578351958203369Salmonella typhimurium LT2, complete genome8e-24108
NC_011080:1944226:196285119628511963219369Salmonella enterica subsp. enterica serovar Newport str. SL254,putative cytoplasmic protein8e-24108
NC_016810:1903426:191540319154031915771369Salmonella enterica subsp. enterica serovar Typhimurium str8e-24108
NC_016860:1943203:195518019551801955548369Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein8e-24108
NC_016863:1905454:191743119174311917799369Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein8e-24108
NC_011147:1057259:107796010779601078328369Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein6e-23106
NC_006511:1063249:108395010839501084318369Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative cytoplasmic protein6e-23106
NC_006905:1961774:197374719737471974115369Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein1e-22104
NC_012125:1897611:191861119186111918940330Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein3e-22103
NC_013850:1887556:1893425189342518945101086Klebsiella variicola At-22 chromosome, complete genomelambda integrase2e-1684.3
NC_011601:1039500:1043517104351710445901074Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase3e-1373.9
NC_013364:2898964:2916736291673629178061071Escherichia coli O111:H- str. 11128, complete genomeputative integrase9e-1372
NC_007712:1516589:1520735152073515218021068Sodalis glossinidius str. 'morsitans', complete genomephage integrase1e-1272
NC_002655:2264773:228294922829492283650702Escherichia coli O157:H7 EDL933, complete genomeputative integrase fragment1e-1168.6
NC_002695:1794635:180352718035271804219693Escherichia coli O157:H7 str. Sakai, complete genomeintegrase2e-1168.2
NC_013008:1715831:172409317240931724785693Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeintegrase2e-1168.2
NC_013361:1754346:176509417650941765786693Escherichia coli O26:H11 str. 11368 chromosome, complete genome2e-1168.2
NC_011601:1466496:147555814755581476250693Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome2e-1167.8
NC_011353:1716037:172511817251181725858741Escherichia coli O157:H7 str. EC4115 chromosome, complete genome2e-1167.8
NC_013941:1613595:162264716226471623387741Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeintegrase2e-1167.8
NC_007650:1192310:1197986119798611991131128Burkholderia thailandensis E264 chromosome II, complete sequenceintegrase-like protein2e-1167.8
NC_012779:1966205:1973860197386019749541095Edwardsiella ictaluri 93-146, complete genomeintegrase2e-1064.7
NC_012967:786534:7879527879527890221071Escherichia coli B str. REL606 chromosome, complete genomeintegrase3e-1063.9
NC_013941:975353:9807899807899818591071Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephage integrase family3e-1063.9
NC_011601:717072:7208917208917219611071Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase3e-1063.9
NC_013508:1687432:1700197170019717012911095Edwardsiella tarda EIB202, complete genomeputative phage integrase protein4e-1063.5
NC_007974:1007834:102021810202181020673456Ralstonia metallidurans CH34 chromosome 2, complete sequencephage integrase2e-0857.8
NC_012947:3015985:303373730337373033898162Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete1e-0652