Pre_GI: BLASTP Hits

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Query: NC_004631:1091303:1092195 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 1092195, End: 1092548, Length: 354

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:1090274:109116610911661091519354Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein7e-63238
NC_003197:1945858:196829619682961968649354Salmonella typhimurium LT2, complete genomehypothetical protein1e-62238
NC_010102:1137247:114245611424561142809354Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-62238
NC_011083:1993672:201731720173172017670354Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein1e-62238
NC_011080:1944226:197391719739171974270354Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein1e-62238
NC_012125:1897611:190281819028181903171354Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-62238
NC_016810:1903426:192586419258641926217354Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-62238
NC_016856:1957263:197970119797011980054354Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein1e-62238
NC_016857:1903426:192586419258641926217354Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein1e-62238
NC_016860:1943203:196383719638371964190354Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-62238
NC_016863:1905454:192789219278921928245354Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein1e-62238
NC_017046:1902788:192522719252271925580354Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein1e-62238
NC_003198:1908238:193393319339331934286354Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein7e-63238
NC_006511:1063249:106845810684581068811354Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein7e-63238
NC_011147:1057259:106246810624681062821354Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein7e-63238
NC_011205:1345511:135072013507201351073354Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein5e-62236
NC_011294:1220526:122573512257351226088354Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein4e-62236
NC_011094:1923870:194685719468571947210354Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein1e-60231
NC_008258:1873805:188785818878581888199342Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-43174
NC_013850:1887556:189274918927491893087339Klebsiella variicola At-22 chromosome, complete genomeProtein of unknown function DUF25119e-43171
NC_016818:3114460:313007831300783130413336Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein1e-31134
NC_017047:3174588:319411231941123194447336Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein1e-31134
NC_015061:3111211:312951031295103129845336Rahnella sp. Y9602 chromosome, complete genomehypothetical protein1e-31134
NC_012912:2553391:256171325617132562051339Dickeya zeae Ech1591, complete genomehypothetical protein4e-31133
NC_016816:2073677:207806720780672078414348Pantoea ananatis LMG 5342, complete genomehypothetical protein3e-27120
NC_010634:2004653:201429620142962014637342Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein4e-27119
NC_010159:1668795:167506816750681675409342Yersinia pestis Angola, complete genomehypothetical protein4e-27119
NC_013421:2306000:231489723148972315253357Pectobacterium wasabiae WPP163, complete genomeProtein of unknown function DUF25116e-27119
NC_015566:2039431:204694520469452047286342Serratia sp. AS12 chromosome, complete genomehypothetical protein2e-25114
NC_015567:2039443:204695720469572047298342Serratia sp. AS9 chromosome, complete genomehypothetical protein2e-25114
NC_020064:2728569:275147427514742751815342Serratia marcescens FGI94, complete genomeProtein of unknown function (DUF2511)9e-1889
NC_020418:3022891:303624730362473036588342Morganella morganii subsp. morganii KT, complete genomehypothetical protein7e-1475.9
NC_015410:2351464:237702523770252377306282Pseudomonas mendocina NK-01 chromosome, complete genomehypothetical protein1e-0755.5