Pre_GI: BLASTP Hits

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Query: NC_004605:741000:756216 Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete

Start: 756216, End: 757085, Length: 870

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005140:660305:675045675045675962918Vibrio vulnificus YJ016 chromosome II, complete sequenceFlp pilus assembly protein TadB1e-103376
NC_016513:974402:986595986595987260666Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeFlp pilus assembly protein TadB2e-38159
NC_004460:81687:964289642897342915Vibrio vulnificus CMCP6 chromosome II, complete sequenceFlp pilus assembly protein TadB9e-104376
NC_017265:3724500:373655837365583737433876Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Flp pilus assembly protein TadB3e-24112
NC_014966:638355:653023653023653940918Vibrio vulnificus MO6-24/O chromosome II, complete sequenceFlp pilus assembly protein TadB4e-103374
NC_007498:2046935:205091920509192051896978Pelobacter carbinolicus DSM 2380, complete genomeFlp pilus assembly protein TadB4e-1375.5
NC_006512:952894:956909956909957610702Idiomarina loihiensis L2TR, complete genomeFlp pilus assembly protein TadB7e-0858.2
NC_018867:361423:380079380079381026948Dehalobacter sp. CF chromosome, complete genomeFlp pilus assembly protein TadB6e-0755.1
NC_017168:341233:353968353968354843876Yersinia pestis A1122 chromosome, complete genomehypothetical protein3e-24112
NC_009381:522731:532020532020532895876Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein3e-24112
NC_004088:3859173:387126138712613872073813Yersinia pestis KIM, complete genomehypothetical protein3e-24112
NC_004463:3857763:3865865386586538668811017Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein7e-0651.6
NC_014029:792719:802003802003802878876Yersinia pestis Z176003 chromosome, complete genomehypothetical protein3e-24112
NC_008150:3430000:344208034420803442955876Yersinia pestis Antiqua, complete genomehypothetical protein3e-24112
NC_017154:734875:744166744166745041876Yersinia pestis D106004 chromosome, complete genomehypothetical protein3e-24112
NC_003143:741169:750459750459751334876Yersinia pestis CO92, complete genomehypothetical protein3e-24112
NC_017160:737000:746344746344747219876Yersinia pestis D182038 chromosome, complete genomehypothetical protein3e-24112
NC_005810:3333000:334240133424013343276876Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein3e-24112
NC_008149:650706:659997659997660872876Yersinia pestis Nepal516, complete genomemembrane protein3e-24112
NC_006155:3992818:400997940099794010854876Yersinia pseudotuberculosis IP 32953, complete genomeputative integral membrane protein.3e-24112
NC_008800:3955284:396767339676733968515843Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative tight adherance operon protein3e-28125
NC_013716:4306695:437223843722384373140903Citrobacter rodentium ICC168, complete genomeputative tight adherence protein B2e-35149
NC_012913:167034:175954175954176838885Aggregatibacter aphrophilus NJ8700, complete genomeTadB1e-38159
NC_013416:668152:680335680335681222888Aggregatibacter actinomycetemcomitans D11S-1, complete genomeTadB1e-38160
NC_002932:440191:455327455327456244918Chlorobium tepidum TLS, complete genomeTadB protein3e-0859.3
NC_002940:1065246:106436210643621065249888Haemophilus ducreyi 35000HP, complete genometight adherence protein B6e-35147
NC_016613:2759908:277448427744842775452969Vibrio sp. EJY3 chromosome 1, complete sequencetight adherence TadB-like transmembrane protein1e-1170.9
NC_014830:532122:5450575450575470151959Intrasporangium calvum DSM 43043 chromosome, complete genomeType II secretion system F domain7e-0754.7
NC_016002:2453919:249578124957812496755975Pseudogulbenkiania sp. NH8B, complete genometype II secretion system F domain containing protein1e-0757.4
NC_015588:95697:108643108643109572930Isoptericola variabilis 225 chromosome, complete genomeType II secretion system F domain protein1e-1274.3
NC_015757:2844599:285604128560412856970930Sulfobacillus acidophilus TPY chromosome, complete genomeType II secretion system F domain protein3e-0755.8
NC_013223:1349000:136491413649141365885972Desulfohalobium retbaense DSM 5692, complete genomeType II secretion system F domain protein1e-0653.9
NC_021171:4549673:456131845613184562301984Bacillus sp. 1NLA3E, complete genometype II secretion system F domain-containing protein2e-1376.6
NC_016884:813000:821307821307822224918Sulfobacillus acidophilus DSM 10332 chromosome, complete genometype II secretion system F domain-containing protein3e-0755.8
NC_008786:266959:271026271026271898873Verminephrobacter eiseniae EF01-2, complete genometype II secretion system protein7e-1064.7
NC_010634:3905369:392144039214403922315876Yersinia pseudotuberculosis PB1/+, complete genometype II secretion system protein3e-24112
NC_008541:3282415:329572832957283296678951Arthrobacter sp. FB24 chromosome 1, complete sequencetype II secretion system protein4e-1479
NC_007794:1553000:156780915678091568795987Novosphingobium aromaticivorans DSM 12444, complete genometype II secretion system protein9e-1374.3
NC_010338:4530403:455321545532154554192978Caulobacter sp. K31, complete genometype II secretion system protein8e-1271.2
NC_009901:2427291:244584524458452446822978Shewanella pealeana ATCC 700345, complete genometype II secretion system protein7e-1168.2
NC_008536:5259438:527572152757215276686966Solibacter usitatus Ellin6076, complete genometype II secretion system protein2e-0859.7
NC_010465:733916:742221742221743096876Yersinia pseudotuberculosis YPIII, complete genometype II secretion system protein8e-25114
NC_011027:1570955:160219716021971603165969Chlorobaculum parvum NCIB 8327, complete genometype II secretion system protein4e-1479
NC_008609:2933468:293953529395352940500966Pelobacter propionicus DSM 2379, complete genometype II secretion system protein7e-1374.7
NC_011886:2950411:297252029725202973470951Arthrobacter chlorophenolicus A6, complete genometype II secretion system protein7e-1271.2
NC_010334:2749250:275746327574632758440978Shewanella halifaxensis HAW-EB4, complete genometype II secretion system protein3e-1169.3
NC_011769:3434744:346271734627173463682966Desulfovibrio vulgaris str. 'Miyazaki F', complete genometype II secretion system protein4e-0962
NC_011894:3885490:390713739071373908120984Methylobacterium nodulans ORS 2060, complete genometype II secretion system protein7e-1581.3
NC_008541:3282415:330340633034063304338933Arthrobacter sp. FB24 chromosome 1, complete sequencetype II secretion system protein2e-1273.2
NC_011886:2950411:297992329799232980855933Arthrobacter chlorophenolicus A6, complete genometype II secretion system protein2e-1170.1
NC_011894:2618951:265750026575002658444945Methylobacterium nodulans ORS 2060, complete genometype II secretion system protein2e-0963.5
NC_009708:692508:701852701852702727876Yersinia pseudotuberculosis IP 31758 chromosome, complete genometype II secretion system protein F domain4e-25115
NC_015224:3820338:384611838461183846789672Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,type II secretion system protein F domain protein2e-28126
NC_010159:259695:271720271720272595876Yersinia pestis Angola, complete genometype II secretion system protein F domain protein3e-24112