Pre_GI: BLASTP Hits

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Query: NC_004605:1385444:1416535 Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete

Start: 1416535, End: 1417404, Length: 870

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011094:2913500:291709529170952917961867Salmonella enterica subsp. enterica serovar Schwarzengrund strsecreted effector protein4e-35148
NC_016860:3029272:303332830333283034194867Salmonella enterica subsp. enterica serovar Typhimurium strsecreted effector protein2e-34145
NC_003197:3005842:300989830098983010806909Salmonella typhimurium LT2, complete genomesecreted effector protein3e-34145
NC_011083:2980356:298441229844122985254843Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,secreted effector protein3e-34145
NC_011274:2881306:288536228853622886270909Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity island membrane protein4e-34145
NC_011294:2890500:289455728945572895465909Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity island membrane protein4e-34145
NC_015761:2726000:273013527301352731034900Salmonella bongori NCTC 12419, complete genomeeffector protein5e-34145
NC_011149:2912219:291841529184152919281867Salmonella enterica subsp. enterica serovar Agona str. SL483,secreted effector protein9e-34144
NC_017046:3027161:303121730312173032056840Salmonella enterica subsp. enterica serovar Typhimurium str. 798Avirulence determinant of plant pathogenic bacteria9e-33140
NC_016810:3028421:303247730324773033382906Salmonella enterica subsp. enterica serovar Typhimurium strAvirulence determinant of plant pathogenic bacteria1e-32140
NC_016857:3028421:303247730324773033382906Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74AvrA1e-32140
NC_011205:3050235:305432030543203055156837Salmonella enterica subsp. enterica serovar Dublin str. CT_020218533e-32139
NC_016831:2867766:287185128718512872687837Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpathogenicity island membrane protein3e-32139
NC_011080:2982346:298644229864422987245804Salmonella enterica subsp. enterica serovar Newport str. SL254,3e-32139
NC_016863:2974333:297846029784602979296837Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1secreted effector protein1e-30133
NC_014932:1232346:1259472125947212605181047Bartonella clarridgeiae 73, complete genomehypothetical protein3e-1995.9
NC_008752:2936933:2975434297543429765551122Acidovorax avenae subsp. citrulli AAC00-1, complete genomepeptidase C551e-1274.3
NC_008752:3217695:3227189322718932283101122Acidovorax avenae subsp. citrulli AAC00-1, complete genomepeptidase C551e-1274.3
NC_007086:4489153:449618644961864497028843Xanthomonas campestris pv. campestris str. 8004, complete genomeavirulence protein6e-1065.1