Pre_GI: BLASTN Hits

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Query: NC_004603:230000 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 230000, End: 256597, Length: 26598

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009783:67044967044970336932921Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequence03965BLASTN svgBLASTP svg
NC_004459:767127*76712778659919473Vibrio vulnificus CMCP6 chromosome I, complete sequence6e-91343BLASTN svgBLASTP svg
NC_005139:34350034350037669433195Vibrio vulnificus YJ016 chromosome I, complete sequence1e-88335BLASTN svgBLASTP svg
NC_013456:145171*14517117166126491Vibrio sp. Ex25 chromosome 1, complete genome1e-61246BLASTN svgBLASTP svg
NC_007954:3171081*3171081321159940519Shewanella denitrificans OS217, complete genome2e-53218BLASTN svgBLASTP svg
NC_010506:2046000*2046000208082534826Shewanella woodyi ATCC 51908, complete genome1e-51212BLASTN svgBLASTP svg
NC_015633:46114346114348763326491Vibrio anguillarum 775 chromosome chromosome I, complete sequence8e-41176BLASTN svgBLASTP svg
NC_008321:1523323*1523323156037837056Shewanella sp. MR-4, complete genome2e-38168BLASTN svgBLASTP svg
NC_009901:1693500*1693500173209938600Shewanella pealeana ATCC 700345, complete genome3e-31145BLASTN svgBLASTP svg
NC_011753:20617820617823311626939Vibrio splendidus LGP32 chromosome 1, complete genome1e-30143BLASTN svgBLASTP svg
NC_009997:35831663583166360265419489Shewanella baltica OS195, complete genome3e-25125BLASTN svgBLASTP svg
NC_008577:15799501579950160290022951Shewanella sp. ANA-3 chromosome 1, complete sequence2e-23119BLASTN svgBLASTP svg
NC_010334:1783500*1783500181555632057Shewanella halifaxensis HAW-EB4, complete genome6e-23117BLASTN svgBLASTP svg
NC_012968:19456141945614197076325150Methylotenera mobilis JLW8, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_021066:46029246029251915858867Raoultella ornithinolytica B6, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_002655:28396002839600287010630507Escherichia coli O157:H7 EDL933, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_002695:27693872769387279989230506Escherichia coli O157:H7 str. Sakai, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_015663:49500004950000501991769918Enterobacter aerogenes KCTC 2190 chromosome, complete genome9e-1693.7BLASTN svgBLASTP svg
CP002185:22337322233732226508731356Escherichia coli W, complete genome4e-1591.7BLASTN svgBLASTP svg
CP002516:18464921846492187615129660Escherichia coli KO11, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_003198:21097752109775214492235148Salmonella enterica subsp. enterica serovar Typhi str. CT18,4e-1591.7BLASTN svgBLASTP svg
NC_004631:86200286200289659934598Salmonella enterica subsp. enterica serovar Typhi Ty2, complete4e-1591.7BLASTN svgBLASTP svg
NC_006511:85478585478589509940315Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC4e-1591.7BLASTN svgBLASTP svg
NC_010102:86186086186089518233323Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,4e-1591.7BLASTN svgBLASTP svg
NC_011080:21616962161696219837536680Salmonella enterica subsp. enterica serovar Newport str. SL254,4e-1591.7BLASTN svgBLASTP svg
NC_011149:21108612110861214483233972Salmonella enterica subsp. enterica serovar Agona str. SL483,4e-1591.7BLASTN svgBLASTP svg
NC_004337:20987362098736212859929864Shigella flexneri 2a str. 301, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_004431:23839012383901241472630826Escherichia coli CFT073, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_004741:20816492081649211300631358Shigella flexneri 2a str. 2457T, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_008253:21341102134110216406229953Escherichia coli 536, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_008258:21006462100646213188931244Shigella flexneri 5 str. 8401, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_009800:21560912156091218719031100Escherichia coli HS, complete genome5e-1487.7BLASTN svgBLASTP svg
AC_000091:20966722096672212665729986Escherichia coli W3110 DNA, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_000913:20925592092559212109928541Escherichia coli K12, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_009654:89449289449291290618415Marinomonas sp. MWYL1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010473:21835672183567221209928533Escherichia coli str. K-12 substr. DH10B, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015968:29753512975351299850323153Enterobacter asburiae LF7a chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_011083:22006132200613223455433942Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,9e-1383.8BLASTN svgBLASTP svg
NC_008345:3394154*3394154341832224169Shewanella frigidimarina NCIMB 400, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_003197:21529942152994218696633973Salmonella typhimurium LT2, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_009092:15995261599526164486445339Shewanella loihica PV-4, complete genome3e-1281.8BLASTN svgBLASTP svg
CU928160:21559472155947218736531419Escherichia coli IAI1 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007613:86408486408489531131228Shigella boydii Sb227, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007946:22318722231872226061428743Escherichia coli UTI89, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009648:26997392699739273776838030Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010468:17750001775000180518230183Escherichia coli ATCC 8739, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_013716:22551022255102228502629925Citrobacter rodentium ICC168, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_013850:16580101658010169680438795Klebsiella variicola At-22 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
AP010958:25040722504072253559331522Escherichia coli O103:H2 str. 12009 DNA, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_007606:19998701999870202709927230Shigella dysenteriae Sd197, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_009801:22761312276131230753131401Escherichia coli E24377A, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010556:2581464*2581464261246831005Exiguobacterium sibiricum 255-15, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010658:10901041090104112159931496Shigella boydii CDC 3083-94, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_009052:33819433381943341170229760Shewanella baltica OS155, complete genome2e-1075.8BLASTN svgBLASTP svg
CU928145:23244952324495235493330439Escherichia coli 55989 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_011748:23244952324495235493330439Escherichia coli 55989, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014219:3254268*3254268329570341436Bacillus selenitireducens MLS10 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_011750:10349191034919106622831310Escherichia coli IAI39 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010498:10354061035406106309927694Escherichia coli SMS-3-5, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009831:36122063612206365403941834Shewanella sediminis HAW-EB3, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009654:866124*86612489071424591Marinomonas sp. MWYL1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_005139:30542030542033120425785Vibrio vulnificus YJ016 chromosome I, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_008570:3220539*3220539328055660018Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013592:713036*71303676182148786Dickeya dadantii Ech586, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014012:16769831676983170572328741Shewanella violacea DSS12, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015224:13910881391088142166930582Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-0869.9BLASTN svgBLASTP svg
NC_008610:94498594498596460219618Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),5e-0867.9BLASTN svgBLASTP svg
NC_007350:1971762*1971762199495223191Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,5e-0867.9BLASTN svgBLASTP svg
NC_007520:1627978*1627978164652818551Thiomicrospira crunogena XCL-2, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007912:26975812697581271653118951Saccharophagus degradans 2-40, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012880:31252613125261315478529525Dickeya dadantii Ech703, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012997:1446037*1446037147363527599Teredinibacter turnerae T7901, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014011:1760793*1760793179428233490Aminobacterium colombiense DSM 12261 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015164:40238814023881404764723767Bacteroides salanitronis DSM 18170 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010067:80712980712983359926471Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete8e-0763.9BLASTN svgBLASTP svg
NC_011566:1639444*1639444165938719944Shewanella piezotolerans WP3, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_011751:23958822395882242503029149Escherichia coli UMN026 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_015144:997587*997587102029322707Weeksella virosa DSM 16922 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_004347:33039573303957332545721501Shewanella oneidensis MR-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009850:661802*66180268186120060Arcobacter butzleri RM4018, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011060:51487451487456528450411Pelodictyon phaeoclathratiforme BU-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014121:33996853399685343519435510Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_014837:2803447*2803447283151828072Pantoea sp. At-9b chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015633:41358741358744184328257Vibrio anguillarum 775 chromosome chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_015975:995009950011791118412Lactobacillus ruminis ATCC 27782 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003910:21753052175305219812622822Colwellia psychrerythraea 34H, complete genome3e-0661.9BLASTN svgBLASTP svg