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Query: NC_004603:1897532 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1897532, End: 1936075, Length: 38544

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013456:17430461743046176911826073Vibrio sp. Ex25 chromosome 1, complete genome01112BLASTN svgBLASTP svg
NC_005140:34000034000036232922330Vibrio vulnificus YJ016 chromosome II, complete sequence01088BLASTN svgBLASTP svg
NC_004460:16188921618892163876819877Vibrio vulnificus CMCP6 chromosome II, complete sequence01072BLASTN svgBLASTP svg
NC_005139:178400017840001927839143840Vibrio vulnificus YJ016 chromosome I, complete sequence01061BLASTN svgBLASTP svg
NC_013456:1819421*1819421184038720967Vibrio sp. Ex25 chromosome 1, complete genome01003BLASTN svgBLASTP svg
NC_013456:1843000*1843000186410221103Vibrio sp. Ex25 chromosome 1, complete genome0674BLASTN svgBLASTP svg
NC_004459:2443000*24430002588599145600Vibrio vulnificus CMCP6 chromosome I, complete sequence0650BLASTN svgBLASTP svg
NC_002506:298868*29886831909920232Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete2e-76295BLASTN svgBLASTP svg
NC_002506:32455232455235839733846Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete1e-52216BLASTN svgBLASTP svg
NC_002506:37062937062943982869200Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete1e-52216BLASTN svgBLASTP svg
NC_011753:20185002018500203623417735Vibrio splendidus LGP32 chromosome 1, complete genome7e-45190BLASTN svgBLASTP svg
NC_014366:3653190*3653190367610422915Gamma proteobacterium HdN1, complete genome3e-44188BLASTN svgBLASTP svg
NC_018679:3843870*3843870386704523176Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, complete1e-43186BLASTN svgBLASTP svg
NC_004460:708416*70841673859930184Vibrio vulnificus CMCP6 chromosome II, complete sequence3e-35159BLASTN svgBLASTP svg
NC_009997:26996442699644272218322540Shewanella baltica OS195, complete genome4e-34155BLASTN svgBLASTP svg
NC_008700:367949*36794939264724699Shewanella amazonensis SB2B, complete genome2e-33153BLASTN svgBLASTP svg
NC_009092:1047500*1047500107272925230Shewanella loihica PV-4, complete genome2e-33153BLASTN svgBLASTP svg
NC_008321:21900002190000221007020071Shewanella sp. MR-4, complete genome9e-26127BLASTN svgBLASTP svg
NC_009901:42162064216206423672120516Shewanella pealeana ATCC 700345, complete genome4e-25125BLASTN svgBLASTP svg
NC_009901:22722062272206230998537780Shewanella pealeana ATCC 700345, complete genome4e-25125BLASTN svgBLASTP svg
NC_009092:37323903732390375553223143Shewanella loihica PV-4, complete genome9e-23117BLASTN svgBLASTP svg
NC_015497:10589801058980108342024441Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome4e-22115BLASTN svgBLASTP svg
NC_002506:82240182240184494222542Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete1e-21113BLASTN svgBLASTP svg
NC_009092:43376174337617437380536189Shewanella loihica PV-4, complete genome5e-21111BLASTN svgBLASTP svg
NC_011753:16807381680738170074920012Vibrio splendidus LGP32 chromosome 1, complete genome3e-19105BLASTN svgBLASTP svg
NC_009052:2683447*2683447270509921653Shewanella baltica OS155, complete genome1e-18103BLASTN svgBLASTP svg
NC_009997:2967521*2967521298899221472Shewanella baltica OS195, complete genome5e-18101BLASTN svgBLASTP svg
NC_010334:26152602615260265659941340Shewanella halifaxensis HAW-EB4, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_014541:2510819*2510819253430723489Ferrimonas balearica DSM 9799 chromosome, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_008750:12533541253354128321029857Shewanella sp. W3-18-1, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_018678:554675*55467557858523911Alteromonas macleodii str. 'English Channel 673' chromosome,2e-0869.9BLASTN svgBLASTP svg
NC_009092:3057319*3057319308409726779Shewanella loihica PV-4, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_006371:14113351411335144430732973Photobacterium profundum SS9 chromosome 2, complete sequence2e-0869.9BLASTN svgBLASTP svg