Pre_GI: BLASTP Hits

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Query: NC_004603:2235142:2246231 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 2246231, End: 2247343, Length: 1113

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014965:2200974:2207072220707222083791308Vibrio vulnificus MO6-24/O chromosome I, complete sequencehypothetical protein3e-36152
NC_017986:4091051:4097376409737640986471272Pseudomonas putida ND6 chromosome, complete genomeintegrase family protein2e-33143
NC_015410:2351464:2364894236489423660601167Pseudomonas mendocina NK-01 chromosome, complete genomephage integrase5e-32138
NC_007963:1552761:1553528155352815546941167Chromohalobacter salexigens DSM 3043, complete genomephage integrase1e-30134
NC_015731:2811579:2817781281778128188661086Nitrosomonas sp. Is79A3 chromosome, complete genomeintegrase family protein2e-29130
NC_013941:3300000:3310496331049633116801185Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein5e-29129
NC_014922:1360000:1373300137330013744451146Haemophilus influenzae F3047 chromosome, complete genomehypothetical protein3e-29129
NC_010943:1938136:1947488194748819486631176Stenotrophomonas maltophilia K279a, complete genomeputative phage integrase protein5e-29128
NC_014500:842493:8599108599108610851176Dickeya dadantii 3937 chromosome, complete genomeIntegrase8e-28124
NC_013361:3651150:3656440365644036576151176Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase7e-27121
NC_007946:2931364:2939949293994929411211173Escherichia coli UTI89, complete genomehypothetical protein8e-26118
NC_008563:2946391:2954976295497629561481173Escherichia coli APEC O1, complete genomehypothetical protein8e-26118
NC_011742:2863316:2872287287228728734591173Escherichia coli S88 chromosome, complete genomehypothetical protein8e-26118
NC_020181:5130513:5161985516198551631511167Enterobacter aerogenes EA1509E, complete genomePhage integrase1e-25117
NC_016816:1970189:1974554197455419757321179Pantoea ananatis LMG 5342, complete genomesite-specific recombinase, phage integrase family5e-25115
NC_013716:2764550:2771293277129327724591167Citrobacter rodentium ICC168, complete genomeputative phage integrase7e-25115
NC_004129:2034500:204479720447972045261465Pseudomonas fluorescens Pf-5, complete genomeintegrase9e-24111
NC_009832:2460027:2464528246452824658141287Serratia proteamaculans 568, complete genomeintegrase family protein7e-23108
NC_021066:2226826:2249897224989722511861290Raoultella ornithinolytica B6, complete genomeInt protein1e-22107
NC_012559:854507:8724628724628737121251Laribacter hongkongensis HLHK9, complete genomePhage integrase7e-22105
NC_010645:1496816:1496816149681614979341119Bordetella avium 197N, complete genomephage integrase3e-21102
NC_009801:1756610:1777435177743517787151281Escherichia coli E24377A, complete genomesite-specific recombinase, phage integrase family4e-21102
NC_007575:973559:9778509778509790311182Sulfurimonas denitrificans DSM 1251, complete genomePhage integrase5e-21102
NC_000913:1625500:1649536164953616507321197Escherichia coli K12, complete genomeQin prophage; predicted defective integrase1e-20101
CP002516:2305659:2306866230686623081461281Escherichia coli KO11, complete genomeintegrase family protein1e-20101
NC_016902:2305659:2306866230686623081461281Escherichia coli KO11FL chromosome, complete genomeintegrase family protein1e-20101
AC_000091:1627049:1653226165322616544221197Escherichia coli W3110 DNA, complete genomepredicted defective integrase1e-20101
NC_012947:2366000:2383979238397923852141236Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeintegrase1e-20100
NC_012967:1403733:1409170140917014104051236Escherichia coli B str. REL606 chromosome, complete genomeintegrase1e-20100
CP002516:2580774:2604076260407626053111236Escherichia coli KO11, complete genomeintegrase family protein1e-20100
AC_000091:1407693:1413714141371414149491236Escherichia coli W3110 DNA, complete genomeintegrase1e-20100
CP002185:1493280:1500539150053915017741236Escherichia coli W, complete genomeRac prophage; integrase1e-20100
NC_000913:1404000:1410024141002414112591236Escherichia coli K12, complete genomeRac prophage; integrase1e-20100
NC_010473:1493983:1499420149942015006551236Escherichia coli str. K-12 substr. DH10B, complete genomeRac prophage integrase1e-20100
NC_011415:1472500:1475428147542814766631236Escherichia coli SE11 chromosome, complete genomeputative phage integrase1e-20100
NC_012759:1296000:1302083130208313033181236Escherichia coli BW2952 chromosome, complete genomeRac prophage; integrase1e-20100
NC_016902:2580774:2604076260407626053111236Escherichia coli KO11FL chromosome, complete genomeintegrase family protein1e-20100
NC_015733:2720183:2744616274461627458001185Pseudomonas putida S16 chromosome, complete genomephage integrase5e-2099
NC_015663:4767443:4791802479180247930821281Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative phage integrase1e-1997.8
NC_012917:2641000:265608626560862656853768Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein2e-1893.6
NC_020260:1615135:1619923161992316212061284Cronobacter sakazakii Sp291, complete genomehypothetical protein3e-1892.8
NC_013446:1724000:1738058173805817392421185Comamonas testosteroni CNB-2, complete genomephage integrase4e-1892.4
NC_009778:1556222:1561010156101015622931284Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-1789.7
NC_020063:2449554:2464493246449324655031011Enterobacteriaceae bacterium strain FGI 57, complete genome6e-1788.6
NC_011415:2153243:2166033216603321673461314Escherichia coli SE11 chromosome, complete genomephage integrase1e-1687.8
NC_015554:1215401:1226362122636212274861125Alteromonas sp. SN2 chromosome, complete genomephage integrase family protein2e-1686.7
NC_010102:1829357:1836497183649718377891293Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-1686.7
NC_009648:1541699:1542683154268315439211239Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative transposase/integrase4e-1685.9
NC_014121:2745097:2759664275966427609561293Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein7e-1685.1
NC_002927:3716894:3762261376226137634841224Bordetella bronchiseptica RB50, complete genomephage integrase3e-1583.2
NC_007948:360199:3852723852723866871416Polaromonas sp. JS666, complete genomephage integrase4e-1582.4
NC_007650:722961:7284727284727295421071Burkholderia thailandensis E264 chromosome II, complete sequenceBbp501e-1481.3
NC_013364:1183000:1183584118358411848941311Escherichia coli O111:H- str. 11128, complete genomeputative integrase1e-1480.9
NC_013361:1558423:1558998155899815603081311Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase2e-1480.5
NC_009524:861500:8670058670058682101206Psychrobacter sp. PRwf-1 chromosome, complete genomephage integrase family protein3e-1479.7
NC_009943:305854:3313733313733325841212Candidatus Desulfococcus oleovorans Hxd3, complete genomeintegrase family protein5e-1479
NC_015740:2998500:300989430098943010136243Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeintegrase family protein7e-1478.6
NC_007298:1418500:1441002144100214422371236Dechloromonas aromatica RCB, complete genomePhage integrase2e-1377
NC_015573:1573621:1574928157492815760401113Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeintegrase family protein3e-1376.3
NC_016514:2387312:2410532241053224118181287Enterobacter cloacae EcWSU1 chromosome, complete genomelambdoid prophage Rac integrase5e-1375.5
NC_016612:3314846:3318797331879733200831287Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein9e-1375.1
NC_010814:3048441:3064888306488830660631176Geobacter lovleyi SZ, complete genomeintegrase family protein3e-1273.2
NC_013921:1396500:1398270139827013994661197Thermoanaerobacter italicus Ab9 chromosome, complete genomeintegrase family protein1e-1171.2
NC_013446:2961647:299325129932512993778528Comamonas testosteroni CNB-2, complete genomephage integrase1e-1067.8
NC_008577:2402165:2417021241702124182441224Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein2e-1067.4
NC_008577:2818546:2835885283588528370631179Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein3e-1066.6
NC_014624:370030:3768543768543779331080Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein3e-1066.6
NC_014624:1010193:1013752101375210149901239Eubacterium limosum KIST612 chromosome, complete genomeintegrase4e-1066.2
NC_009802:1570215:158759815875981588380783Campylobacter concisus 13826, complete genomesite-specific recombinase, phage integrase family protein4e-1066.2
NC_014554:1821320:1838281183828118394441164Lactobacillus plantarum subsp. plantarum ST-III chromosome,prophage Lp2 protein 2, integrase4e-1065.9
NC_013971:1927510:193987019398701940574705Erwinia amylovora ATCC 49946 chromosome, complete genomeintegrase (partial)5e-1065.9
NC_013961:1891000:190234319023431903047705Erwinia amylovora, complete genomeTransposase A from transposon Tn5545e-1065.9
NC_012108:2159230:2163721216372121648811161Desulfobacterium autotrophicum HRM2, complete genomepredicted bacteriophage P4 integrase6e-1065.5
NC_005835:1773482:1778579177857917797571179Thermus thermophilus HB27, complete genomeDNA integration/recombination/invertion protein7e-1065.1
NC_014623:1600360:1600360160036016015471188Stigmatella aurantiaca DW4/3-1 chromosome, complete genomephage integrase family protein1e-0964.3
NC_014623:2418762:2452315245231524535021188Stigmatella aurantiaca DW4/3-1 chromosome, complete genomephage integrase family protein6e-0962
NC_009715:873280:892465892465893295831Campylobacter curvus 525.92 chromosome, complete genomeATP synthase C chain8e-0961.6
NC_014355:288000:2962442962442972841041Candidatus Nitrospira defluvii, complete genomeputative phage integrase2e-0860.5
NC_014650:603500:6101966101966113951200Geobacillus sp. Y4.1MC1 chromosome, complete genomeintegrase4e-0859.7
NC_014638:321382:3346733346733358661194Bifidobacterium bifidum PRL2010 chromosome, complete genomeDNA integration/recombination/inversion protein5e-0859.3
NC_017955:693303:7105207105207117371218Modestobacter marinus, complete genomeintegrase8e-0858.5
NC_014910:1765065:177180517718051772131327Alicycliphilus denitrificans BC chromosome, complete genome6e-0858.5
NC_016052:2038000:2049973204997320510971125Tetragenococcus halophilus NBRC 12172, complete genomeputative site-specific recombinase2e-0757.4
NC_017030:8599515:8613843861384386150331191Corallococcus coralloides DSM 2259 chromosome, complete genomephage integrase family site specific recombinase2e-0757
NC_019897:3057000:3064727306472730658631137Thermobacillus composti KWC4 chromosome, complete genomesite-specific recombinase XerD2e-0757
NC_014833:3667748:366955436695543670528975Ruminococcus albus 7 chromosome, complete genomeintegrase family protein2e-0756.6
NC_017278:48630:6202062020631921173Thermus sp. CCB_US3_UF1 chromosome, complete genomeDNA integration/recombination/inversion protein4e-0756.2
NC_020207:1906803:1923725192372519248641140Enterococcus faecium NRRL B-2354, complete genomePhage integrase5e-0755.8
NC_014364:2976748:2976748297674829779981251Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeintegrase family protein5e-0755.8
NC_013853:2048867:2067275206727520684411167Streptococcus mitis B6, complete genomephage-related integrase, recombinase4e-0755.8
NC_017904:666285:6702366702366713931158Mycobacterium sp. MOTT36Y chromosome, complete genomeprophage integrase5e-0755.5
NC_015572:427732:453825453825454112288Methylomonas methanica MC09 chromosome, complete genome6e-0755.5
NC_007712:1516589:1520735152073515218021068Sodalis glossinidius str. 'morsitans', complete genomephage integrase1e-0654.7
NC_014738:1635000:163740416374041638279876Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,integrase family protein2e-0654.3
NC_017219:333279:3432663432663444891224Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein2e-0653.9
NC_011593:333488:3434753434753446981224Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,phage integrase family protein2e-0653.9
NC_012815:1682872:1694483169448316957031221Bifidobacterium animalis subsp. lactis DSM 10140, complete genomehypothetical protein2e-0653.5
NC_012814:1682500:1694766169476616959861221Bifidobacterium animalis subsp. lactis Bl-04, complete genomehypothetical protein2e-0653.5
NC_011835:813345:8255358255358267551221Bifidobacterium animalis subsp. lactis AD011 chromosome, completephage integrase2e-0653.5
NC_017214:379728:3919203919203931401221Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeDNA integration/recombination/inversion protein2e-0653.5
NC_017215:1687161:1699353169935317005731221Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,DNA integration/recombination/inversion protein2e-0653.5
NC_017216:1682219:1694411169441116956311221Bifidobacterium animalis subsp. lactis BLC1, complete genomePhage integrase family2e-0653.5
NC_017217:1688441:1700052170005217012721221Bifidobacterium animalis subsp. lactis V9 chromosome, completehypothetical protein2e-0653.5
NC_010571:2423732:2432783243278324339581176Opitutus terrae PB90-1, complete genomeintegrase family protein3e-0653.1
NC_015167:3652015:3656745365674536578391095Cellulophaga lytica DSM 7489 chromosome, complete genomeintegrase family protein4e-0653.1
NC_009328:814530:8199338199338210961164Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeDNA integration/recombination/invertion protein8e-0651.6