Pre_GI: BLASTP Hits

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Query: NC_004603:2235142:2240007 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 2240007, End: 2241344, Length: 1338

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014965:2200974:2204394220439422057281335Vibrio vulnificus MO6-24/O chromosome I, complete sequenceintegrase2e-76286
NC_015410:2258800:2276000227600022773761377Pseudomonas mendocina NK-01 chromosome, complete genomeintegrase family protein3e-29130
NC_011146:3426500:3474592347459234759021311Geobacter bemidjiensis Bem, complete genomeintegrase family protein5e-29129
NC_015740:2614317:263366526336652634567903Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein2e-28127
NC_002939:1866651:1874575187457518762451671Geobacter sulfurreducens PCA, complete genomeintegrative genetic element Gsu5, integrase3e-28126
NC_013854:1686997:1697457169745716991721716Azospirillum sp. B510, complete genomephage integrase family protein8e-28125
NC_008027:1847040:1862344186234418636361293Pseudomonas entomophila L48, complete genomeintegrase1e-24114
NC_012918:1697860:1704183170418317054751293Geobacter sp. M21 chromosome, complete genomeintegrase family protein2e-23110
NC_014973:1941500:1955814195581419571001287Geobacter sp. M18 chromosome, complete genomeintegrase family protein3e-23109
NC_014541:1231021:1236294123629412375351242Ferrimonas balearica DSM 9799 chromosome, complete genomeintegrase family protein2e-22107
NC_011146:1998981:2013194201319420144981305Geobacter bemidjiensis Bem, complete genomeintegrase family protein2e-22107
NC_010501:3987615:3992949399294939942741326Pseudomonas putida W619, complete genomeintegrase family protein4e-22106
NC_015567:1127780:1135692113569211367711080Serratia sp. AS9 chromosome, complete genomeintegrase family protein4e-22106
NC_015566:1127595:1135507113550711365861080Serratia sp. AS12 chromosome, complete genomeintegrase family protein4e-22106
NC_014117:132524:1736441736441747381095Burkholderia sp. CCGE1002 chromosome chromosome 1, completeintegrase family protein1e-21104
NC_009850:1862602:1876559187655918780941536Arcobacter butzleri RM4018, complete genomehypothetical protein3e-21103
NC_016010:1822212:1827666182766618291471482Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeintegrase3e-21103
NC_009348:2034500:2041208204120820424731266Aeromonas salmonicida subsp. salmonicida A449, complete genomephage integrase family site specific recombinase3e-21103
NC_016010:1169850:1185584118558411871041521Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeIntegrase XerC6e-21102
NC_007508:1221500:1255730125573012572471518Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative integrase1e-20101
NC_003902:1858349:1865420186542018668141395Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related integrase2e-20100
NC_009952:2217877:2223872222387222254611590Dinoroseobacter shibae DFL 12, complete genomeputative integrase2e-1997.1
NC_007519:1782067:1787842178784217896921851Desulfovibrio alaskensis G20 chromosome, complete genomehypothetical protein3e-1997.1
NC_014973:3452100:3471071347107134723601290Geobacter sp. M18 chromosome, complete genomeintegrase family protein3e-1997.1
NC_012796:2041579:2048611204861120503621752Desulfovibrio magneticus RS-1, complete genomesite-specific recombinase3e-1997.1
NC_007643:3799425:3824154382415438258541701Rhodospirillum rubrum ATCC 11170, complete genomePhage integrase9e-1995.1
NC_003911:1265972:1277271127727112788601590Silicibacter pomeroyi DSS-3, complete genomesite-specific recombinase, phage integrase family4e-1893.2
NC_007951:570500:5772355772355786531419Burkholderia xenovorans LB400 chromosome 1, complete sequencehypothetical protein2e-1790.5
NC_010524:1005355:1017147101714710183131167Leptothrix cholodnii SP-6, complete genomeintegrase family protein3e-1790.1
NC_005773:4797242:4804838480483848066551818Pseudomonas syringae pv. phaseolicola 1448A, complete genomesite-specific recombinase, phage integrase family1e-1688.2
NC_011757:4293000:4318726431872643204951770Methylobacterium chloromethanicum CM4, complete genomeintegrase family protein2e-1687.4
NC_009434:3611738:3619731361973136210711341Pseudomonas stutzeri A1501, complete genomeintegrase4e-1686.7
NC_010682:460523:4937344937344950531320Ralstonia pickettii 12J chromosome 1, complete sequenceintegrase family protein4e-1686.3
NC_010688:3030873:3061417306141730628171401Xanthomonas campestris pv. campestris, complete genomephage-related integrase5e-1686.3
NC_016803:593484:5983485983486000871740Desulfovibrio desulfuricans ND132 chromosome, complete genomeintegrase family protein5e-1685.9
NC_003919:1716831:1730204173020417315381335Xanthomonas axonopodis pv. citri str. 306, complete genomeintegrase1e-1585.1
NC_016010:1169850:1180972118097211820451074Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeIntegrase XerC1e-1584.7
NC_010804:2808676:2815315281531528166851371Burkholderia multivorans ATCC 17616 chromosome 1, completeintegrase / tyrosine recombinase1e-1584.7
NC_009256:3056000:3062577306257730639471371Burkholderia vietnamiensis G4 chromosome 1, complete sequencephage integrase family protein1e-1584.7
NC_010084:695817:7080887080887094581371Burkholderia multivorans ATCC 17616 chromosome 1, completeintegrase family protein1e-1584.7
NC_011000:1023800:1035090103509010364601371Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative phage-related integrase1e-1584.7
NC_008782:1863853:1871054187105418726701617Acidovorax sp. JS42, complete genomephage integrase family protein2e-1584.3
NC_009439:4661102:4664986466498646666801695Pseudomonas mendocina ymp, complete genomehypothetical protein2e-1584
NC_014153:2044500:2065464206546420667681305Thiomonas intermedia K12 chromosome, complete genomeintegrase family protein2e-1584
NC_011662:1160887:1170392117039211715971206Thauera sp. MZ1T, complete genomehypothetical protein3e-1583.2
NC_009076:779407:7927997927997941571359Burkholderia pseudomallei 1106a chromosome I, complete sequencesite-specific recombinase, phage integrase family9e-1582
NC_006350:845513:8574748574748588321359Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative phage-related integrase9e-1582
NC_007434:1001514:1016158101615810173961239Burkholderia pseudomallei 1710b chromosome I, complete sequenceputative phage-related integrase9e-1581.6
NC_017271:3641705:3684013368401336854131401Xanthomonas campestris pv. raphani 756C chromosome, completeintegrase2e-1480.9
NC_010511:915313:9290119290119306001590Methylobacterium sp. 4-46 chromosome, complete genomeintegrase family protein2e-1480.5
NC_013173:953633:9706779706779727402064Desulfomicrobium baculatum DSM 4028, complete genomeintegrase family protein4e-1479.7
NC_015850:736680:7427277427277441751449Acidithiobacillus caldus SM-1 chromosome, complete genomehypothetical protein7e-1479
NC_011000:3362382:3368967336896733707271761Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative integrase9e-1478.6
NC_010682:460523:4676864676864692871602Ralstonia pickettii 12J chromosome 1, complete sequencephage integrase1e-1378.6
NC_015381:3789661:3796625379662537982231599Burkholderia gladioli BSR3 chromosome 1, complete sequenceputative phage-related integrase1e-1378.2
NC_011283:4438500:4450876445087644520841209Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase2e-1377.8
NC_013421:3752619:3762474376247437644141941Pectobacterium wasabiae WPP163, complete genomeintegrase family protein2e-1377.4
NC_020409:584000:5846785846785863511674Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeputative Phage integrase6e-1375.9
NC_007946:289425:2952282952282971681941Escherichia coli UTI89, complete genomeputative integrase6e-1375.9
NC_017075:1674758:1676897167689716786241728Rubrivivax gelatinosus IL144, complete genomephage integrase family protein6e-1375.9
NC_012968:239476:2397482397482412021455Methylotenera mobilis JLW8, complete genomehypothetical protein8e-1375.5
NC_012560:4350465:4356428435642843582361809Azotobacter vinelandii DJ, complete genomephage integrase-like protein1e-1275.1
NC_021150:4350461:4356424435642443582321809Azotobacter vinelandii CA6, complete genomephage integrase-like protein1e-1275.1
NC_010511:7024412:7031164703116470326931530Methylobacterium sp. 4-46 chromosome, complete genomeintegrase family protein1e-1275.1
NC_015850:1006980:1027150102715010289371788Acidithiobacillus caldus SM-1 chromosome, complete genomephage integrase1e-1275.1
NC_010804:831000:8402588402588422131956Burkholderia multivorans ATCC 17616 chromosome 1, completetyrosine recombinase9e-1375.1
NC_010084:2674972:2682560268256026845151956Burkholderia multivorans ATCC 17616 chromosome 1, completeintegrase family protein9e-1375.1
NC_015733:4130000:4140692414069241419091218Pseudomonas putida S16 chromosome, complete genomeintegrase family protein1e-1274.7
NC_009511:2726296:2731027273102727328081782Sphingomonas wittichii RW1 chromosome, complete genomephage integrase family protein2e-1274.3
NC_010172:5447189:5468358546835854696831326Methylobacterium extorquens PA1, complete genomeintegrase family protein3e-1273.6
NC_008435:1215437:1217650121765012195841935Rhodopseudomonas palustris BisA53, complete genomephage integrase family protein3e-1273.6
NC_016901:2542110:2553824255382425553501527Shewanella baltica OS678 chromosome, complete genomeintegrase family protein3e-1273.6
NC_009485:7021228:7039994703999470418501857Bradyrhizobium sp. BTAi1 chromosome, complete genomelambda integrase-like/ DNA breaking-rejoining enzyme, catalytic core3e-1273.2
NC_012660:1579204:1604792160479216062341443Pseudomonas fluorescens SBW25 chromosome, complete genomeputative phage integrase4e-1273.2
NC_007643:791500:7959047959047970641161Rhodospirillum rubrum ATCC 11170, complete genomePhage integrase5e-1272.8
NC_015594:214500:2285072285072297541248Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeintegrase family protein7e-1272.4
NC_008609:1394377:1408298140829814094431146Pelobacter propionicus DSM 2379, complete genomehypothetical protein9e-1272
NC_009997:3483157:3489964348996434914901527Shewanella baltica OS195, complete genomeintegrase family protein1e-1171.6
NC_009997:2585588:2593907259390725954331527Shewanella baltica OS195, complete genomeintegrase family protein1e-1171.6
NC_016901:3430401:3437208343720834387341527Shewanella baltica OS678 chromosome, complete genomeintegrase family protein1e-1171.6
NC_010688:3515885:3552388355238835537821395Xanthomonas campestris pv. campestris, complete genomephage-related integrase1e-1171.6
NC_013361:313540:3324433324433337201278Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase1e-1171.6
NC_009720:216589:2196452196452212971653Xanthobacter autotrophicus Py2, complete genomeintegrase family protein1e-1171.2
NC_007086:2887875:2931121293112129322631143Xanthomonas campestris pv. campestris str. 8004, complete genomephage-related integrase2e-1171.2
NC_009434:608765:6778376778376802902454Pseudomonas stutzeri A1501, complete genomehypothetical protein2e-1170.9
NC_008228:816000:8211628211628230211860Pseudoalteromonas atlantica T6c, complete genomephage integrase3e-1170.5
NC_011601:4856717:4861028486102848622391212Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase2e-1170.5
NC_014117:132524:1345211345211360951575Burkholderia sp. CCGE1002 chromosome chromosome 1, completehypothetical protein2e-1170.5
NC_010511:1641416:1641416164141616429631548Methylobacterium sp. 4-46 chromosome, complete genomeintegrase domain-containing protein3e-1170.1
NC_009800:4529504:4532707453270745346561950Escherichia coli HS, complete genomesite-specific recombinase, phage integrase family4e-1169.7
NC_013209:160892:1860491860491874221374Acetobacter pasteurianus IFO 3283-01, complete genomephage integrase4e-1169.7
NC_017100:160892:1860491860491874221374Acetobacter pasteurianus IFO 3283-03, complete genomephage integrase4e-1169.7
NC_017108:160892:1860491860491874221374Acetobacter pasteurianus IFO 3283-12, complete genomephage integrase4e-1169.7
NC_017111:160892:1860491860491874221374Acetobacter pasteurianus IFO 3283-32, complete genomephage integrase4e-1169.7
NC_017121:160892:1860491860491874221374Acetobacter pasteurianus IFO 3283-07, complete genomephage integrase4e-1169.7
NC_017125:160892:1860491860491874221374Acetobacter pasteurianus IFO 3283-22, complete genomephage integrase4e-1169.7
NC_017146:160892:1860491860491874221374Acetobacter pasteurianus IFO 3283-26, complete genomephage integrase4e-1169.7
NC_017150:160892:1860491860491874221374Acetobacter pasteurianus IFO 3283-01-42C, complete genomephage integrase4e-1169.7
NC_016585:116143:1196871196871216841998Azospirillum lipoferum 4B plasmid AZO_p1, complete sequencehypothetical protein6e-1169.3
NC_016010:1822212:1855472185547218566231152Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeintegrase8e-1168.9
NC_008347:1636660:1655238165523816569861749Maricaulis maris MCS10, complete genomephage integrase family protein9e-1168.6
NC_007626:3393940:3402977340297734043441368Magnetospirillum magneticum AMB-1, complete genomeIntegrase2e-1067.8
NC_010688:1192410:1196622119662211981871566Xanthomonas campestris pv. campestris, complete genomephage-related integrase2e-1067.8
NC_013855:56344:6317763177653152139Azospirillum sp. B510 plasmid pAB510a, complete sequenceintegrase2e-1067.4
NC_014307:1619000:1623749162374916253741626Ralstonia solanacearum CFBP2957 chromosome, complete genomephage integrase3e-1067
NC_007086:3118116:312299731229973123545549Xanthomonas campestris pv. campestris str. 8004, complete genomephage-related integrase3e-1067
NC_009434:608765:6764126764126776831272Pseudomonas stutzeri A1501, complete genomehypothetical protein4e-1066.6
NC_014972:3604534:3621721362172136228721152Desulfobulbus propionicus DSM 2032 chromosome, complete genomehypothetical protein7e-1065.9
NC_003902:1858349:1882328188232818837761449Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related integrase6e-1065.9
NC_010725:356609:3691903691903708721683Methylobacterium populi BJ001, complete genomeintegrase family protein5e-1065.9
NC_007508:3865000:3899877389987739010221146Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative phage-related integrase8e-1065.5
NC_012796:2683711:2690065269006526917561692Desulfovibrio magneticus RS-1, complete genomeputative site-specific recombinase8e-1065.5
NC_013456:2528284:2536921253692125386211701Vibrio sp. Ex25 chromosome 1, complete genomeintegrase1e-0964.7
NC_020260:440000:4553004553004564781179Cronobacter sakazakii Sp291, complete genomeputative integrase2e-0964.7
NC_010688:3229820:3237928323792832394601533Xanthomonas campestris pv. campestris, complete genomephage-related integrase2e-0964.3
NC_010338:1394550:1401072140107214028381767Caulobacter sp. K31, complete genomehypothetical protein2e-0963.9
NC_015740:3631326:3631326363132636323571032Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein3e-0963.5
NC_010688:1192410:1205404120540412068521449Xanthomonas campestris pv. campestris, complete genomephage-related integrase3e-0963.5
NC_012808:58701:6196261962637671806Methylobacterium extorquens AM1, complete genomehypothetical protein3e-0963.2
NC_014844:2828370:2841263284126328429511689Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomehypothetical protein5e-0962.8
NC_004603:1115134:1121252112125211223881137Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein5e-0962.8
NC_013446:4281250:4294269429426942959961728Comamonas testosteroni CNB-2, complete genomePhage integerase5e-0962.8
NC_020181:4800298:4819881481988148210831203Enterobacter aerogenes EA1509E, complete genomeputative integrase7e-0962.4
NC_009434:3611738:3621234362123436224931260Pseudomonas stutzeri A1501, complete genomehypothetical protein9e-0962
NC_003919:1716831:1744033174403317455651533Xanthomonas axonopodis pv. citri str. 306, complete genomephage-related integrase1e-0861.6
NC_017150:853708:8619728619728635761605Acetobacter pasteurianus IFO 3283-01-42C, complete genomehypothetical protein1e-0861.2
NC_007778:1053462:1068814106881410701661353Rhodopseudomonas palustris HaA2, complete genomePhage integrase2e-0860.8
NC_011365:1969198:1993000199300019945951596Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeintegrase family protein2e-0860.8
NC_013209:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-01, complete genomephage integrase4e-0860.1
NC_017100:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-03, complete genomephage integrase4e-0860.1
NC_017108:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-12, complete genomephage integrase4e-0860.1
NC_017111:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-32, complete genomephage integrase4e-0860.1
NC_017121:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-07, complete genomephage integrase4e-0860.1
NC_017125:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-22, complete genomephage integrase4e-0860.1
NC_017146:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-26, complete genomephage integrase4e-0860.1
NC_017150:160892:196840196840197349510Acetobacter pasteurianus IFO 3283-01-42C, complete genomephage integrase4e-0860.1
NC_014355:139324:1433791433791448211443Candidatus Nitrospira defluvii, complete genomeputative integrase3e-0860.1
NC_009256:2509806:2517264251726425185321269Burkholderia vietnamiensis G4 chromosome 1, complete sequencephage integrase domain/SAM domain-containing protein4e-0859.7
NC_008702:815264:8306858306858323551671Azoarcus sp. BH72, complete genomeputative integrase7e-0858.9
NC_007298:3764048:3776475377647537781541680Dechloromonas aromatica RCB, complete genomePhage integrase1e-0758.5
NC_017322:1360764:1366668136666813680021335Sinorhizobium meliloti BL225C chromosome, complete genomeintegrase family protein1e-0758.2
NC_017325:1897500:1914476191447619158101335Sinorhizobium meliloti SM11 chromosome, complete genomephage integrase1e-0758.2
NC_007298:2689731:2698059269805926993271269Dechloromonas aromatica RCB, complete genomePhage integrase1e-0758.2
NC_007516:1283210:1293375129337512945771203Synechococcus sp. CC9605, complete genomeSite-specific recombinase XerD-like2e-0757.4
NC_007778:3470661:3470661347066134723071647Rhodopseudomonas palustris HaA2, complete genomePhage integrase2e-0757.4
NC_016027:1902854:1915181191518119164671287Gluconacetobacter xylinus NBRC 3288, complete genomephage integrase3e-0757
NC_003198:3042000:3058163305816330598091647Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible integrase3e-0756.6
NC_011894:6888562:6908936690893669100121077Methylobacterium nodulans ORS 2060, complete genomeintegrase family protein3e-0756.6
NC_013361:3867558:3901815390181539034221608Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase9e-0755.5
NC_008435:604772:6092996092996109421644Rhodopseudomonas palustris BisA53, complete genomephage integrase family protein8e-0755.5
NC_016832:3020000:3032325303232530339441620Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Site-specific recombinase, phage integrase1e-0655.1
NC_004631:3030580:3043685304368530451481464Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-0655.1
NC_016818:859181:8751518751518763651215Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completesite-specific recombinase XerD1e-0655.1
NC_015519:2489728:250341725034172504274858Tepidanaerobacter sp. Re1 chromosome, complete genomeintegrase family protein2e-0654.3
NC_012808:157156:1637561637561654741719Methylobacterium extorquens AM1, complete genomePhage integrase family protein3e-0653.9
NC_015422:3366500:3376628337662833779141287Alicycliphilus denitrificans K601 chromosome, complete genomehypothetical protein4e-0653.1
NC_020064:3825916:3832193383219338333921200Serratia marcescens FGI94, complete genomephage integrase family protein6e-0652.8