Pre_GI: BLASTP Hits

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Query: NC_004603:1897532:1935447 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1935447, End: 1935800, Length: 354

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005140:340000:350458350458350901444Vibrio vulnificus YJ016 chromosome II, complete sequenceRelB protein2e-63240
NC_002506:370629:433310433310433678369Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completerelB protein2e-51200
NC_002506:324552:343518343518343886369Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completerelB protein2e-51200
NC_009456:787322:801567801567801935369Vibrio cholerae O395 chromosome 1, complete sequenceCopG family transcriptional regulator2e-51200
NC_012583:440420:462007462007462375369Vibrio cholerae O395 chromosome chromosome II, complete sequencerelB protein2e-51200
NC_012667:931390:933475933475933843369Vibrio cholerae MJ-1236 chromosome 2, complete genomeDNA-damage-inducible protein J2e-51200
NC_012667:931390:101783610178361018204369Vibrio cholerae MJ-1236 chromosome 2, complete genomeRelB protein2e-51200
NC_014966:328056:336522336522336806285Vibrio vulnificus MO6-24/O chromosome II, complete sequenceDNA-damage-inducible protein J2e-48190
NC_004460:1618892:162622316262231626507285Vibrio vulnificus CMCP6 chromosome II, complete sequenceDNA-damage-inducible protein J2e-48190
NC_004603:1897532:192866619286661928950285Vibrio parahaemolyticus RIMD 2210633 chromosome I, completeRelB protein/Vco27A protein2e-47187
NC_012580:301500:321520321520321840321Vibrio cholerae M66-2 chromosome II, complete sequencerelB protein1e-47187
NC_014965:1428902:145588614558861456170285Vibrio vulnificus MO6-24/O chromosome I, complete sequenceDNA-damage-inducible protein J2e-44177
NC_016446:119914:133851133851134135285Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completeRelB protein5e-43172
NC_016446:49618:685836858368867285Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completeDNA-damage-inducible protein J5e-43172
NC_016945:324519:343334343334343618285Vibrio cholerae IEC224 chromosome II, complete sequenceCopG family transcriptional regulator5e-43172
NC_016945:370471:433129433129433413285Vibrio cholerae IEC224 chromosome II, complete sequenceCopG family transcriptional regulator5e-43172
NC_017269:303500:329994329994330278285Vibrio cholerae LMA3984-4 chromosome II, complete sequenceDNA-damage-inducible protein J5e-43172
NC_014618:4657719:467521146752114675498288Enterobacter cloacae SCF1 chromosome, complete genomeDNA-damage-inducible protein J6e-1166.2
NC_013592:2160000:217939821793982179685288Dickeya dadantii Ech586, complete genomeputative DNA-damage-inducible protein J4e-1063.5
NC_014500:894136:901693901693901977285Dickeya dadantii 3937 chromosome, complete genomeDNA-damage-inducible protein J1e-0962
NC_014500:1862000:189256518925651892849285Dickeya dadantii 3937 chromosome, complete genomeDNA-damage-inducible protein J4e-0650.1