Pre_GI: BLASTP Hits

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Query: NC_004603:1519904:1532018 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1532018, End: 1533223, Length: 1206

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
CP002797:1960000:1963242196324219644531212Escherichia coli NA114, complete genomeTyrosine-specific transport protein6e-86318
NC_012967:1967675:1967675196767519688861212Escherichia coli B str. REL606 chromosome, complete genometyrosine transporter1e-85317
NC_009348:2034500:2056076205607620572691194Aeromonas salmonicida subsp. salmonicida A449, complete genometyrosine-specific transport protein5e-69261
NC_009092:3783000:3796157379615737973441188Shewanella loihica PV-4, complete genomearomatic amino acid permease7e-59228
NC_015169:1:2344823448246591212Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequencetryptophan/tyrosine permease7e-54211
NC_005810:1413305:1429625142962514308691245Yersinia pestis biovar Microtus str. 91001, complete genometryptophan-specific transport protein2e-41170
NC_008150:1147883:1147883114788311491271245Yersinia pestis Antiqua, complete genomeputative tryptophan-specific transport protein2e-41170
NC_006155:1567306:1569315156931515705591245Yersinia pseudotuberculosis IP 32953, complete genomeputative HAAAP family tryptophan-specific transporter mtr2e-41170
NC_008149:3022970:3039267303926730405111245Yersinia pestis Nepal516, complete genometryptophan-specific transport protein2e-41170
NC_010465:3046904:3063260306326030645041245Yersinia pseudotuberculosis YPIII, complete genomearomatic amino acid transporter2e-41170
NC_010634:1565788:1567797156779715690411245Yersinia pseudotuberculosis PB1/+, complete genomearomatic amino acid transporter2e-41170
NC_003143:1441211:1443220144322014444641245Yersinia pestis CO92, complete genomeputative tryptophan-specific transport protein2e-41170
NC_004088:3186954:3203259320325932045031245Yersinia pestis KIM, complete genometryptophan-specific transport protein2e-41170
NC_009381:2731965:2748261274826127495051245Yersinia pestis Pestoides F chromosome, complete genometryptophan-specific transport protein2e-41170
NC_014029:1512605:1514614151461415158581245Yersinia pestis Z176003 chromosome, complete genomeputative tryptophan-specific transport protein2e-41170
NC_017154:1454704:1456713145671314579571245Yersinia pestis D106004 chromosome, complete genomeputative tryptophan-specific transport protein2e-41170
NC_017160:1299733:1315854131585413170981245Yersinia pestis D182038 chromosome, complete genometyrosine-specific transport protein2e-41170
NC_017168:4363000:4365280436528043665241245Yersinia pestis A1122 chromosome, complete genometryptophan-specific transport protein2e-41170
NC_017265:2807302:2823608282360828248521245Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative tryptophan-specific transport protein2e-41170
NC_009708:3035798:3052142305214230533861245Yersinia pseudotuberculosis IP 31758 chromosome, complete genometryptophan-specific transport protein7e-41168
NC_015713:1594114:1597914159791415991431230Simkania negevensis Z chromosome gsn.131, complete genometyrosine-specific transport protein4e-40166
NC_010159:1558000:1560088156008815613261239Yersinia pestis Angola, complete genometryptophan-specific transport protein2e-39163
NC_009494:775676:8085328085328097941263Legionella pneumophila str. Corby chromosome, complete genometryptophan/tyrosine permease6e-38158
NC_014125:766576:7945717945717957671197Legionella pneumophila 2300/99 Alcoy chromosome, complete genometryptophan/tyrosine permease6e-38158
NC_015224:889536:9067989067989080601263Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,tryptophan permease5e-33142
NC_004337:3590323:3860500386050038617471248Shigella flexneri 2a str. 301, complete genomelow-affinity tryptophan permease6e-33142
NC_011750:4490573:4490573449057344918201248Escherichia coli IAI39 chromosome, complete genometryptophan permease TnaB1e-32141
NC_011751:4373961:4373961437396143752081248Escherichia coli UMN026 chromosome, complete genometryptophan permease TnaB1e-32140
NC_010498:4166903:4166903416690341681501248Escherichia coli SMS-3-5, complete genome2e-32140
NC_002655:4747926:4747926474792647491731248Escherichia coli O157:H7 EDL933, complete genomelow affinity tryptophan permease3e-32139
NC_002695:4678945:4678945467894546801921248Escherichia coli O157:H7 str. Sakai, complete genomelow affinity tryptophan permease3e-32139
NC_011353:4782040:4782040478204047832871248Escherichia coli O157:H7 str. EC4115 chromosome, complete genometryptophan permease TnaB3e-32139
NC_013008:4738083:4738083473808347393301248Escherichia coli O157:H7 str. TW14359 chromosome, complete genometryptophan permease TnaB3e-32139
NC_020418:3133831:3150886315088631521541269Morganella morganii subsp. morganii KT, complete genomeTryptophan-specific transport protein6e-32138
NC_009792:3225965:3228824322882432300861263Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-30133
NC_002620:229856:2395892395892407851197Chlamydia muridarum Nigg, complete genomeMtr/TnaB/TyrO permease family protein5e-30132
NC_002620:229856:2409822409822421691188Chlamydia muridarum Nigg, complete genomeMtr/TnaB/TyrO permease family protein3e-29129
NC_007109:894000:9146949146949158931200Rickettsia felis URRWXCal2, complete genomePutative to amino acid permeases5e-26119
NC_015663:1902344:1918659191865919198191161Enterobacter aerogenes KCTC 2190 chromosome, complete genometyrosine permease2e-21103
NC_008601:1151653:1169873116987311710841212Francisella tularensis subsp. novicida U112, complete genomehydroxy/aromatic amino acid permease (HAAAP) family protein7e-1375.5
NC_019942:1270060:1289390128939012905531164Aciduliprofundum sp. MAR08-339, complete genomeamino acid permease5e-1065.9