Pre_GI: BLASTP Hits

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Query: NC_004603:1464000:1467486 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1467486, End: 1468466, Length: 981

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021066:4177217:418936241893624190264903Raoultella ornithinolytica B6, complete genomeputative transcriptional regulator3e-21102
NC_008782:3252092:325901532590153259920906Acidovorax sp. JS42, complete genometranscriptional regulator, LysR family1e-20100
NC_014217:4550544:458732945873294588243915Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, LysR family4e-2099
NC_008781:2611702:262742326274232628379957Polaromonas naphthalenivorans CJ2, complete genometranscriptional regulator, LysR family1e-1997.8
NC_015711:3546500:356156035615603562501942Myxococcus fulvus HW-1 chromosome, complete genomeLysR family transcripitonal regulator4e-1995.9
NC_013446:2961647:296904529690452969968924Comamonas testosteroni CNB-2, complete genometranscriptional regulator, LysR family9e-1994.4
NC_010524:4402478:442545844254584426423966Leptothrix cholodnii SP-6, complete genometranscriptional regulator, LysR family2e-1893.2
NC_008392:1029134:104404010440401044942903Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, LysR family6e-1891.7
NC_010557:679656:712468712468713370903Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, LysR family6e-1891.7
NC_011000:3362382:337903133790313379969939Burkholderia cenocepacia J2315 chromosome 1, complete sequenceLysR family regulatory protein9e-1891.3
NC_006371:1411335:144096814409681441873906Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical transcriptional regulator, LysR family9e-1891.3
NC_012912:4167429:417109541710954172015921Dickeya zeae Ech1591, complete genometranscriptional regulator, LysR family1e-1790.9
NC_009656:4079319:408279240827924083724933Pseudomonas aeruginosa PA7 chromosome, complete genomeLysR family transcriptional regulator1e-1790.9
NC_015730:3662934:366653636665363667375840Roseobacter litoralis Och 149 chromosome, complete genomeHTH-type LysR family transcriptional regulator7e-1788.2
NC_002947:4167500:417027541702754171180906Pseudomonas putida KT2440, complete genometranscriptional regulator, LysR family1e-1687.4
NC_014121:2090630:210224621022462103172927Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completebacterial regulatory protein, LysR1e-1687.4
NC_011184:597496:615775615775616707933Vibrio fischeri MJ11 chromosome I, complete sequencetranscriptional regulator, LysR family2e-1687
NC_013446:2919005:293064129306412931594954Comamonas testosteroni CNB-2, complete genometranscriptional regulator, LysR family2e-1687
NC_015424:2316228:231775323177532318688936Aeromonas veronii B565 chromosome, complete genomeLysR family transcriptional regulator2e-1686.7
NC_015957:7348269:739581873958187396717900Streptomyces violaceusniger Tu 4113 chromosome, complete genomeLysR family transcriptional regulator3e-1686.3
NC_015138:272500:274941274941275930990Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeLysR family transcriptional regulator3e-1686.3
NC_013446:2130021:214234221423422143295954Comamonas testosteroni CNB-2, complete genometranscriptional regulator, LysR family3e-1685.9
NC_016514:1183356:119434011943401195299960Enterobacter cloacae EcWSU1 chromosome, complete genomePCP degradation transcriptional activation protein4e-1685.9
NC_011365:1865687:189835118983511899322972Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeLysR family transcriptional regulator6e-1685.1
NC_014623:1883259:189844618984461899354909Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeLysR family transcriptional regulator9e-1684.7
NC_018691:4619245:462260946226094623520912Alcanivorax dieselolei B5 chromosome, complete genomeTranscriptional regulator, LysR family2e-1583.2
NC_017986:5833819:583514258351425836062921Pseudomonas putida ND6 chromosome, complete genomeNahR3e-1582.8
NC_012988:5516872:553280755328075533766960Methylobacterium extorquens DM4, complete genomeLysR family transcriptional regulator4e-1582.4
NC_015138:201323:211862211862212773912Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeLysR family transcriptional regulator5e-1582
NC_016830:1645879:166625916662591667191933Pseudomonas fluorescens F113 chromosome, complete genomeLysR family transcriptional regulator6e-1582
NC_008752:166877:1820701820701833681299Acidovorax avenae subsp. citrulli AAC00-1, complete genometranscriptional regulator, LysR family7e-1581.6
NC_010505:2530476:2551319255131925523201002Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, LysR family1e-1481.3
NC_014012:1421979:142218014221801423097918Shewanella violacea DSS12, complete genometranscriptional regulator, LysR family1e-1481.3
NC_004129:3452885:348876534887653489682918Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, LysR family8e-1581.3
NC_015968:2195645:222627322262732227205933Enterobacter asburiae LF7a chromosome, complete genomeLysR family transcriptional regulator8e-1581.3
NC_020209:1986503:200880320088032009744942Pseudomonas poae RE*1-1-14, complete genomeLysR family transcription regulator protein1e-1480.9
NC_010625:1602191:162819216281921629166975Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencetranscriptional regulator, LysR family1e-1480.5
NC_007511:3512100:353444735344473535373927Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, LysR family2e-1480.5
NC_010172:5036385:504634750463475047306960Methylobacterium extorquens PA1, complete genomeLysR substrate-binding2e-1480.1
NC_008061:2368517:239821323982132399139927Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, LysR family2e-1480.1
NC_020211:103371:126887126887127789903Serratia marcescens WW4, complete genomeLysR family transcriptional regulator1e-1377.8
NC_012796:3374911:338169533816953382615921Desulfovibrio magneticus RS-1, complete genomehypothetical protein1e-1377.4
NC_016613:2759908:276659327665932767510918Vibrio sp. EJY3 chromosome 1, complete sequenceLysR family transcriptional regulator2e-1376.6
NC_008786:5128363:513497951349795135926948Verminephrobacter eiseniae EF01-2, complete genometranscriptional regulator, LysR family3e-1375.9
NC_014311:3348102:336671533667153367680966Ralstonia solanacearum PSI07 chromosome, complete genomeHTH-type transcriptional regulator syrM 14e-1375.9
NC_020181:1317647:131764713176471318570924Enterobacter aerogenes EA1509E, complete genomeTranscriptional regulator, LysR family4e-1375.9
NC_018678:87064:107354107354108277924Alteromonas macleodii str. 'English Channel 673' chromosome,LysR family transcriptional regulator4e-1375.9
NC_010623:1961685:196825519682551969184930Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, LysR family4e-1375.9
NC_014641:20103:310553105531963909Achromobacter xylosoxidans A8 plasmid pA81, complete sequencebacterial regulatory helix-turn-helix protein, LysR family protein 2035e-1375.5
NC_009524:861500:878447878447879355909Psychrobacter sp. PRwf-1 chromosome, complete genomeLysR family transcriptional regulator6e-1375.1
NC_007645:3756654:375780337578033758747945Hahella chejuensis KCTC 2396, complete genomeTranscriptional regulator6e-1375.1
NC_014013:112008:129080129080130036957Sphingobium japonicum UT26S chromosome 2, complete genomeLysR-family transcriptional regulator6e-1375.1
NC_011365:1865687:188826518882651889218954Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeLysR family transcriptional regulator9e-1374.7
NC_015733:2720183:273520827352082736122915Pseudomonas putida S16 chromosome, complete genomeLysR family transcriptional regulator1e-1274.3
NC_007953:938346:945917945917946852936Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, LysR family1e-1274.3
NC_014641:20103:410434104341975933Achromobacter xylosoxidans A8 plasmid pA81, complete sequenceHTH-type transcriptional activator NahR 31e-1273.9
NC_010125:1011430:101697210169721017925954Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulator, LysR family2e-1273.6
NC_015663:3466471:348000034800003480920921Enterobacter aerogenes KCTC 2190 chromosome, complete genomeLysR family transcriptional regulator3e-1273.2
NC_011751:4373961:437649143764914377450960Escherichia coli UMN026 chromosome, complete genomeDNA-binding transcriptional regulator YidZ3e-1272.8
NC_013941:4567820:456897045689704569929960Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDNA-binding transcriptional regulator YidZ3e-1272.8
NC_013008:4738083:474061247406124741571960Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDNA-binding transcriptional regulator YidZ3e-1272.8
NC_011353:4782040:478456947845694785528960Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeDNA-binding transcriptional regulator YidZ3e-1272.8
NC_002695:4678945:468147446814744682433960Escherichia coli O157:H7 str. Sakai, complete genomeputative transcriptional regulator LYSR-type3e-1272.8
NC_002655:4747926:475045547504554751414960Escherichia coli O157:H7 EDL933, complete genomeputative transcriptional regulator LYSR-type4e-1272.4
NC_014966:328056:347027347027347971945Vibrio vulnificus MO6-24/O chromosome II, complete sequencelysR-family transcriptional regulator7e-1271.6
NC_005140:340000:359000359000359944945Vibrio vulnificus YJ016 chromosome II, complete sequencetranscriptional regulator7e-1271.6
NC_016027:2512297:2523752252375225248161065Gluconacetobacter xylinus NBRC 3288, complete genomeLysR family transcriptional regulator7e-1271.6
NC_011750:4490573:449310344931034494062960Escherichia coli IAI39 chromosome, complete genomeDNA-binding transcriptional regulator YidZ8e-1271.6
NC_010498:4166903:416943341694334170392960Escherichia coli SMS-3-5, complete genomeLysR family transcriptional regulator8e-1271.6
NC_006569:370846:381777381777382751975Silicibacter pomeroyi DSS-3 megaplasmid, complete sequencetranscriptional regulator, LysR family1e-1170.9
NC_011283:785973:800657800657801586930Klebsiella pneumoniae 342 chromosome, complete genomeLysR family transcriptional regulator1e-1170.9
NC_010338:588000:591892591892592821930Caulobacter sp. K31, complete genometranscriptional regulator, LysR family1e-1170.5
NC_008541:2119883:213613321361332137020888Arthrobacter sp. FB24 chromosome 1, complete sequencetranscriptional regulator, LysR family2e-1170.5
NC_013592:2338403:235105423510542351965912Dickeya dadantii Ech586, complete genometranscriptional regulator, LysR family2e-1170.1
NC_004460:1618892:163372816337281634660933Vibrio vulnificus CMCP6 chromosome II, complete sequenceTranscriptional regulator, LysR family2e-1170.1
NC_010529:296500:311314311314312246933Cupriavidus taiwanensis plasmid pRALTA, complete sequenceNodD transcriptional regulator; lysR family4e-1168.9
NC_010511:4258000:427139842713984272324927Methylobacterium sp. 4-46 chromosome, complete genomeLysR family transcriptional regulator7e-1168.2
NC_009439:2427120:243460724346072435509903Pseudomonas mendocina ymp, complete genomeLysR family transcriptional regulator9e-1167.8
NC_020126:9938287:994969299496929950684993Myxococcus stipitatus DSM 14675, complete genomeLysR family transcriptional regulator1e-1067.8
NC_015727:1357095:137410813741081374824717Cupriavidus necator N-1 plasmid BB1p, complete sequenceLysR family transcriptional regulator1e-1067.8
NC_015727:1357095:137833313783331379250918Cupriavidus necator N-1 plasmid BB1p, complete sequenceLysR family transcriptional regulator1e-1067.4
NC_016830:3230939:325379932537993254713915Pseudomonas fluorescens F113 chromosome, complete genomeprotein MexT2e-1067
NC_015376:2241000:225434222543422255334993Burkholderia gladioli BSR3 chromosome chromosome 2, completetranscriptional regulator MexT2e-1066.6
NC_009436:3807420:381830238183023819228927Enterobacter sp. 638, complete genomeLysR family transcriptional regulator3e-1066.2
NC_015379:3736500:373842937384293739343915Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, LysR family5e-1065.5
NC_009648:4497749:451456145145614515520960Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeDNA-binding transcriptional regulator YidZ9e-1064.7
NC_004463:2158116:218239221823922183336945Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein2e-0963.9
NC_017986:5467279:547918954791895480121933Pseudomonas putida ND6 chromosome, complete genomeLysR family transcriptional regulator2e-0963.2
NC_017249:7993713:809553280955328096425894Bradyrhizobium japonicum USDA 6, complete genometranscriptional regulator5e-0962.4
NC_008392:1029134:106160010616001062565966Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, LysR family6e-0962
NC_009512:3068495:307157930715793072511933Pseudomonas putida F1, complete genometranscriptional regulator, LysR family8e-0961.6
NC_009937:311242:314202314202315176975Azorhizobium caulinodans ORS 571, complete genomeputative transcriptional regulator2e-0860.5
NC_007511:3512100:352254135225413523473933Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, LysR family3e-0859.7
NC_011894:4066926:409482740948274095753927Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, LysR family5e-0858.9
NC_015675:6615245:661844666184466619429984Mesorhizobium opportunistum WSM2075 chromosome, complete genomeLysR family transcriptional regulator1e-0757.8
NC_014923:6060859:606377860637786064761984Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeLysR substrate-binding protein1e-0757.8
NC_019973:5989816:599273559927355993718984Mesorhizobium australicum WSM2073, complete genometranscriptional regulator1e-0757.8
NC_007952:3196085:322589732258973226814918Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, LysR family1e-0757.4
NC_011000:2732330:279787027978702798769900Burkholderia cenocepacia J2315 chromosome 1, complete sequenceLysR family regulatory protein1e-0757.4
NC_003296:262118:276258276258277172915Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE TRANSCRIPTION REGULATOR PROTEIN2e-0757
NC_016901:2070121:208311620831162084009894Shewanella baltica OS678 chromosome, complete genomeLysR family transcriptional regulator2e-0756.6
NC_009997:2069894:208252920825292083422894Shewanella baltica OS195, complete genometranscriptional regulator, LysR family2e-0756.6
NC_016830:1645879:166486316648631665786924Pseudomonas fluorescens F113 chromosome, complete genomeLysR family transcriptional regulator4e-0755.8
NC_011368:678291:683316683316684248933Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201,LysR family transcriptional regulator6e-0755.5
NC_017047:4298207:431741043174104318366957Rahnella aquatilis HX2 chromosome, complete genomeLysR family transcriptional regulator2e-0653.9
NC_015061:4203767:4223495422349542245111017Rahnella sp. Y9602 chromosome, complete genomeLysR family transcriptional regulator2e-0653.9
NC_009439:1297851:130384013038401304802963Pseudomonas mendocina ymp, complete genomeLysR family transcriptional regulator1e-0653.9
NC_012724:147454:164392164392165333942Burkholderia glumae BGR1 chromosome 1, complete genomeTranscriptional regulator, LysR family protein2e-0653.1
NC_015424:3277292:328098932809893281870882Aeromonas veronii B565 chromosome, complete genomeNodD transcription activator-like protein4e-0652.4
NC_010501:4989455:498945549894554990393939Pseudomonas putida W619, complete genometranscriptional regulator, LysR family8e-0651.6