Pre_GI: BLASTP Hits

Some Help

Query: NC_004603:1115134:1120488 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1120488, End: 1120937, Length: 450

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013456:2528284:253894725389472539396450Vibrio sp. Ex25 chromosome 1, complete genomehypothetical protein3e-78290
AP010958:3238742:326168832616883262137450Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted inner membrane protein1e-45181
NC_010473:2839902:288895128889512889400450Escherichia coli str. K-12 substr. DH10B, complete genomepredicted inner membrane protein1e-45181
NC_000913:2746886:279718627971862797635450Escherichia coli K12, complete genomepredicted inner membrane protein1e-45181
CU928160:2818750:284407228440722844521450Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; putative inner membrane protein1e-45181
AC_000091:2747520:279782027978202798269450Escherichia coli W3110 DNA, complete genomepredicted inner membrane protein1e-45181
NC_011601:2998326:302502530250253025474450Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein1e-45181
NC_011741:2818750:284407228440722844521450Escherichia coli IAI1 chromosome, complete genomehypothetical protein1e-45181
NC_012759:2633949:268299826829982683447450Escherichia coli BW2952 chromosome, complete genomeputative inner membrane protein1e-45181
NC_012967:2669182:269391626939162694365450Escherichia coli B str. REL606 chromosome, complete genomeputative inner membrane protein1e-45181
NC_013353:3238742:326168832616883262137450Escherichia coli O103:H2 str. 12009, complete genomeinner membrane protein1e-45181
NC_013364:3339768:336277733627773363226450Escherichia coli O111:H- str. 11128, complete genomeputative inner membrane protein4e-45179
NC_009778:567000:567011567011567487477Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-44177
NC_020260:603796:603796603796604251456Cronobacter sakazakii Sp291, complete genomehypothetical protein3e-44177
NC_011750:2928990:296669829666982967147450Escherichia coli IAI39 chromosome, complete genomehypothetical protein1e-43175
NC_014840:205723:237841237841238344504Pantoea sp. At-9b plasmid pPAT9B03, complete sequencehypothetical protein4e-1683.6
NC_007494:739403:760909760909761316408Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequencehypothetical protein6e-1373.2