Query: NC_004578:3193490 Pseudomonas syringae pv. tomato str. DC3000, complete genome
Start: 3193490, End: 3235118, Length: 41629
Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria
General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_007005:3199820 | 3199820 | 3239802 | 39983 | Pseudomonas syringae pv. syringae B728a, complete genome | 0 | 955 | BLASTN svg | BLASTP svg |
NC_009434:608765 | 608765 | 682099 | 73335 | Pseudomonas stutzeri A1501, complete genome | 1e-166 | 595 | BLASTN svg | BLASTP svg |
NC_010501:3575726 | 3575726 | 3605099 | 29374 | Pseudomonas putida W619, complete genome | 2e-150 | 541 | BLASTN svg | BLASTP svg |
NC_009434:3611738* | 3611738 | 3748875 | 137138 | Pseudomonas stutzeri A1501, complete genome | 3e-149 | 537 | BLASTN svg | BLASTP svg |
NC_015740:141910 | 141910 | 164195 | 22286 | Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete | 2e-132 | 482 | BLASTN svg | BLASTP svg |
NC_015740:2407500* | 2407500 | 2446827 | 39328 | Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete | 2e-132 | 482 | BLASTN svg | BLASTP svg |
NC_015740:2614317 | 2614317 | 2650049 | 35733 | Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete | 2e-132 | 482 | BLASTN svg | BLASTP svg |
NC_015740:3631326* | 3631326 | 3661739 | 30414 | Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete | 2e-132 | 482 | BLASTN svg | BLASTP svg |
NC_015740:4072415 | 4072415 | 4097198 | 24784 | Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete | 2e-132 | 482 | BLASTN svg | BLASTP svg |
NC_004578:4204235* | 4204235 | 4225454 | 21220 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 4e-62 | 248 | BLASTN svg | BLASTP svg |
NC_004578:3849835 | 3849835 | 3872607 | 22773 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 2e-61 | 246 | BLASTN svg | BLASTP svg |
NC_004578:1719849* | 1719849 | 1742217 | 22369 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 2e-61 | 246 | BLASTN svg | BLASTP svg |
NC_007492:3384077 | 3384077 | 3417174 | 33098 | Pseudomonas fluorescens PfO-1, complete genome | 8e-42 | 180 | BLASTN svg | BLASTP svg |
NC_007492:3180480 | 3180480 | 3234740 | 54261 | Pseudomonas fluorescens PfO-1, complete genome | 7e-36 | 161 | BLASTN svg | BLASTP svg |
NC_007005:98488* | 98488 | 136931 | 38444 | Pseudomonas syringae pv. syringae B728a, complete genome | 2e-33 | 153 | BLASTN svg | BLASTP svg |
NC_009434:1580205* | 1580205 | 1601124 | 20920 | Pseudomonas stutzeri A1501, complete genome | 2e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_009434:695582 | 695582 | 767394 | 71813 | Pseudomonas stutzeri A1501, complete genome | 2e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_011892:77975 | 77975 | 120406 | 42432 | Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete | 2e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_015976:2900891* | 2900891 | 2925145 | 24255 | Sphingobium sp. SYK-6, complete genome | 8e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_007412:147757 | 147757 | 175255 | 27499 | Anabaena variabilis ATCC 29413 plasmid C, complete sequence | 1e-09 | 73.8 | BLASTN svg | BLASTP svg |
NC_011757:1146608* | 1146608 | 1174218 | 27611 | Methylobacterium chloromethanicum CM4, complete genome | 8e-08 | 67.9 | BLASTN svg | BLASTP svg |
AC_000091:273325 | 273325 | 301797 | 28473 | Escherichia coli W3110 DNA, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_000913:272071 | 272071 | 301797 | 29727 | Escherichia coli K12, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_008740:3520500* | 3520500 | 3564330 | 43831 | Marinobacter aquaeolei VT8, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_008740:443274* | 443274 | 518916 | 75643 | Marinobacter aquaeolei VT8, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_020063:2230000 | 2230000 | 2270486 | 40487 | Enterobacteriaceae bacterium strain FGI 57, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_005773:3220500 | 3220500 | 3252777 | 32278 | Pseudomonas syringae pv. phaseolicola 1448A, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_008740:1815743 | 1815743 | 1851149 | 35407 | Marinobacter aquaeolei VT8, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_008740:220642* | 220642 | 250336 | 29695 | Marinobacter aquaeolei VT8, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_010805:575709 | 575709 | 641475 | 65767 | Burkholderia multivorans ATCC 17616 chromosome 2, complete | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_015593:2103815* | 2103815 | 2148252 | 44438 | Sphingobium chlorophenolicum L-1 chromosome chromosome 1, complete | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_010086:1816378 | 1816378 | 1889768 | 73391 | Burkholderia multivorans ATCC 17616 chromosome 2, complete | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_010162:11387949 | 11387949 | 11410785 | 22837 | Sorangium cellulosum 'So ce 56', complete genome | 5e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_004129:3452885 | 3452885 | 3494840 | 41956 | Pseudomonas fluorescens Pf-5, complete genome | 5e-06 | 61.9 | BLASTN svg | BLASTP svg |