Pre_GI: BLASTN Hits

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Query: NC_004578:3193490 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3193490, End: 3235118, Length: 41629

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007005:31998203199820323980239983Pseudomonas syringae pv. syringae B728a, complete genome0955BLASTN svgBLASTP svg
NC_009434:60876560876568209973335Pseudomonas stutzeri A1501, complete genome1e-166595BLASTN svgBLASTP svg
NC_010501:35757263575726360509929374Pseudomonas putida W619, complete genome2e-150541BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome3e-149537BLASTN svgBLASTP svg
NC_015740:14191014191016419522286Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-132482BLASTN svgBLASTP svg
NC_015740:2407500*2407500244682739328Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-132482BLASTN svgBLASTP svg
NC_015740:26143172614317265004935733Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-132482BLASTN svgBLASTP svg
NC_015740:3631326*3631326366173930414Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-132482BLASTN svgBLASTP svg
NC_015740:40724154072415409719824784Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-132482BLASTN svgBLASTP svg
NC_004578:4204235*4204235422545421220Pseudomonas syringae pv. tomato str. DC3000, complete genome4e-62248BLASTN svgBLASTP svg
NC_004578:38498353849835387260722773Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-61246BLASTN svgBLASTP svg
NC_004578:1719849*1719849174221722369Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-61246BLASTN svgBLASTP svg
NC_007492:33840773384077341717433098Pseudomonas fluorescens PfO-1, complete genome8e-42180BLASTN svgBLASTP svg
NC_007492:31804803180480323474054261Pseudomonas fluorescens PfO-1, complete genome7e-36161BLASTN svgBLASTP svg
NC_007005:98488*9848813693138444Pseudomonas syringae pv. syringae B728a, complete genome2e-33153BLASTN svgBLASTP svg
NC_009434:1580205*1580205160112420920Pseudomonas stutzeri A1501, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_009434:69558269558276739471813Pseudomonas stutzeri A1501, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_011892:779757797512040642432Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete2e-1179.8BLASTN svgBLASTP svg
NC_015976:2900891*2900891292514524255Sphingobium sp. SYK-6, complete genome8e-1177.8BLASTN svgBLASTP svg
NC_007412:14775714775717525527499Anabaena variabilis ATCC 29413 plasmid C, complete sequence1e-0973.8BLASTN svgBLASTP svg
NC_011757:1146608*1146608117421827611Methylobacterium chloromethanicum CM4, complete genome8e-0867.9BLASTN svgBLASTP svg
AC_000091:27332527332530179728473Escherichia coli W3110 DNA, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_000913:27207127207130179729727Escherichia coli K12, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_008740:3520500*3520500356433043831Marinobacter aquaeolei VT8, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_008740:443274*44327451891675643Marinobacter aquaeolei VT8, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_020063:22300002230000227048640487Enterobacteriaceae bacterium strain FGI 57, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_005773:32205003220500325277732278Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_008740:18157431815743185114935407Marinobacter aquaeolei VT8, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_008740:220642*22064225033629695Marinobacter aquaeolei VT8, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_010805:57570957570964147565767Burkholderia multivorans ATCC 17616 chromosome 2, complete1e-0663.9BLASTN svgBLASTP svg
NC_015593:2103815*2103815214825244438Sphingobium chlorophenolicum L-1 chromosome chromosome 1, complete1e-0663.9BLASTN svgBLASTP svg
NC_010086:18163781816378188976873391Burkholderia multivorans ATCC 17616 chromosome 2, complete1e-0663.9BLASTN svgBLASTP svg
NC_010162:11387949113879491141078522837Sorangium cellulosum 'So ce 56', complete genome5e-0661.9BLASTN svgBLASTP svg
NC_004129:34528853452885349484041956Pseudomonas fluorescens Pf-5, complete genome5e-0661.9BLASTN svgBLASTP svg