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Query: NC_004578:895019:919701 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 919701, End: 920189, Length: 489

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:866157:892074892074892562489Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein4e-80296
NC_011742:291237:302957302957303571615Escherichia coli S88 chromosome, complete genomehypothetical protein6e-21100
NC_007946:289425:313593313593314207615Escherichia coli UTI89, complete genomehypothetical protein YagU6e-21100
NC_004431:364000:378117378117378731615Escherichia coli CFT073, complete genomeHypothetical protein yagU6e-21100
NC_008253:334467:370290370290370904615Escherichia coli 536, complete genomeputative integral membrane protein6e-21100
NC_013850:2182337:220767722076772208303627Klebsiella variicola At-22 chromosome, complete genomeprotein of unknown function DUF14407e-2199.8
NC_011748:299080:317383317383317997615Escherichia coli 55989, complete genomeconserved hypothetical protein; putative inner membrane protein8e-2199.4
CU928145:299080:317383317383317997615Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; putative inner membrane protein8e-2199.4
NC_010498:301000:319364319364319978615Escherichia coli SMS-3-5, complete genomehypothetical protein8e-2199.4
NC_011601:273430:273430273430274044615Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein8e-2199.4
NC_012947:3487392:350859335085933509207615Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein8e-2199.4
NC_013361:313540:339618339618340232615Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein8e-2199.4
NC_020063:2011019:201969120196912020317627Enterobacteriaceae bacterium strain FGI 57, complete genomeputative periplasmic/secreted protein1e-2098.6
NC_013421:553193:555341555341555955615Pectobacterium wasabiae WPP163, complete genomeprotein of unknown function DUF14401e-1995.5
NC_014643:1251847:125602812560281256627600Rothia dentocariosa ATCC 17931 chromosome, complete genomehypothetical protein2e-1891.3
NC_009792:3665369:369360736936073694083477Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-1789.4
NC_010554:539122:542647542647543168522Proteus mirabilis HI4320, complete genomephage membrane protein3e-1580.9
NC_017353:2129738:212973821297382130247510Staphylococcus lugdunensis N920143, complete genomehypothetical protein2e-1477.8
NC_017154:3094000:311501931150193115567549Yersinia pestis D106004 chromosome, complete genomehypothetical protein8e-1372.8
NC_014319:587977:607408607408607881474Leuconostoc gasicomitatum LMG 18811, complete genomeintegral membrane protein7e-1269.7