Pre_GI: BLASTP Hits

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Query: NC_004578:895019:898972 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 898972, End: 899047, Length: 76

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:830467:83537283537283544776Pseudomonas syringae pv. syringae B728a, complete genometRNA-Lys1e-0651.6
NC_015556:4074367:40989984098998409907376Pseudomonas fulva 12-X chromosome, complete genometRNA-Lys1e-0651.6
NC_009439:860571:86329186329186336676Pseudomonas mendocina ymp, complete genometRNA-Lys1e-0651.6
NC_004129:5481629:54935115493511549358676Pseudomonas fluorescens Pf-5, complete genometRNA-Lys1e-0651.6
NC_004578:4465247:44764344476434447650976Pseudomonas syringae pv. tomato str. DC3000, complete genometRNA-Lys1e-0651.6
NC_005773:866157:87106387106387113876Pseudomonas syringae pv. phaseolicola 1448A, complete genometRNA-Lys1e-0651.6
NC_008027:4953432:49761584976158497623376Pseudomonas entomophila L48, complete genometRNA-Lys1e-0651.6
NC_018080:4465618:44791734479173447924876Pseudomonas aeruginosa DK2 chromosome, complete genometRNA-Lys7e-0649.3
NC_002516:1031386:10603561060356106043176Pseudomonas aeruginosa PAO1, complete genometRNA-Lys7e-0649.3