Pre_GI: BLASTP Hits

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Query: NC_004578:5916711:5932029 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5932029, End: 5932424, Length: 396

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:5916711:592807159280715928466396Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-70263
NC_009439:101174:113794113794114204411Pseudomonas mendocina ymp, complete genomehypothetical protein7e-2199
NC_004547:2470978:247953024795302479928399Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein3e-1684
NC_020064:2299950:231746823174682317875408Serratia marcescens FGI94, complete genomehypothetical protein1e-0858.5
NC_014306:679888:691018691018691419402Erwinia billingiae Eb661, complete genomeexported protein6e-0856.2
NC_010102:1979742:200051320005132000908396Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0755.1
NC_012125:2646792:266773926677392668134396Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein4e-0753.5
NC_011147:1763681:178596917859691786364396Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-0753.5
NC_006511:1770000:179078617907861791181396Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative secreted protein4e-0753.5
NC_009436:1679265:169295016929501693345396Enterobacter sp. 638, complete genomehypothetical protein3e-0650.8