Pre_GI: BLASTP Hits

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Query: NC_004578:5623783:5643627 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5643627, End: 5644244, Length: 618

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008344:2465042:248701224870122487647636Nitrosomonas eutropha C91, complete genomeNucleoside diphosphate pyrophosphatase2e-42172
NC_008789:7347:298992989930540642Halorhodospira halophila SL1, complete genomeNUDIX hydrolase1e-41169
NC_011420:1178762:119509311950931195734642Rhodospirillum centenum SW, complete genomehypothetical protein3e-41167
NC_010468:694943:716660716660717289630Escherichia coli ATCC 8739, complete genomeADP-ribose diphosphatase3e-40164
NC_013353:3787991:378799137879913788620630Escherichia coli O103:H2 str. 12009, complete genomeADP-ribose pyrophosphatase5e-40164
NC_012947:708064:728457728457729086630Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeADP-ribose pyrophosphatase NudF5e-40164
AP010958:3787991:378799137879913788620630Escherichia coli O103:H2 str. 12009 DNA, complete genomeADP-ribose pyrophosphatase5e-40164
NC_007643:1781723:179533217953321795964633Rhodospirillum rubrum ATCC 11170, complete genomeNucleoside diphosphate pyrophosphatase8e-39160
NC_016632:1399993:140161314016131402266654Serratia symbiotica str. 'Cinara cedri' chromosome, completeADP-ribose pyrophosphatase5e-37154
NC_007802:1991211:1991211199121119923381128Jannaschia sp. CCS1, complete genomeNucleoside diphosphate pyrophosphatase3e-23108
NC_014100:172452:171868171868172455588Caulobacter segnis ATCC 21756 chromosome, complete genomeNUDIX hydrolase7e-1580.5
NC_015138:2110149:212599021259902126571582Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completenucleoside diphosphate pyrophosphatase9e-1580.1
NC_007952:1416000:142246714224671423063597Burkholderia xenovorans LB400 chromosome 2, complete sequenceConserved hypothetical protein 524e-1478.2
NC_010623:188143:191830191830192417588Burkholderia phymatum STM815 chromosome 2, complete sequenceNUDIX hydrolase4e-1477.8
NC_009832:2460027:246088324608832461479597Serratia proteamaculans 568, complete genomeNUDIX hydrolase7e-1477.4
NC_002696:3759551:377783537778353778422588Caulobacter crescentus CB15, complete genomehypothetical protein7e-1477
NC_010508:981377:100316710031671003766600Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceNUDIX hydrolase1e-1376.6
NC_008542:1021848:104991110499111050510600Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceNucleoside diphosphate pyrophosphatase1e-1376.6
NC_008060:476861:505264505264505863600Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceNucleoside diphosphate pyrophosphatase1e-1376.6
NC_008752:3684739:368473936847393685347609Acidovorax avenae subsp. citrulli AAC00-1, complete genomeNUDIX hydrolase2e-1375.5
NC_015638:2588954:260159626015962602174579Lacinutrix sp. 5H-3-7-4 chromosome, complete genomenucleoside diphosphate pyrophosphatase1e-1273.2
NC_009078:2718741:272248427224842723071588Burkholderia pseudomallei 1106a chromosome II, complete sequencenudix hydrolase, YffH family3e-1271.6
NC_007435:1446916:145065914506591451246588Burkholderia pseudomallei 1710b chromosome II, complete sequenceconserved hypothetical protein TIGR000523e-1271.6
NC_006351:2759708:276157627615762762172597Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein3e-1271.6
NC_011666:2435438:243962924396292440225597Methylocella silvestris BL2, complete genomeNUDIX hydrolase4e-1271.2
NC_015761:2444833:245193024519302452505576Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-1065.9
NC_015931:71361:756267562676159534Pyrolobus fumarii 1A, complete genomeNUDIX hydrolase5e-1064.3
NC_014837:3126543:313990131399013140479579Pantoea sp. At-9b chromosome, complete genomeNUDIX hydrolase8e-1063.5
NC_012917:833721:855945855945856526582Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeNUDIX hydrolase1e-0962.8
NC_004547:913553:937554937554938135582Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative mutT/NUDIX family protein2e-0962
NC_013421:1038500:104165510416551042236582Pectobacterium wasabiae WPP163, complete genomeNUDIX hydrolase7e-0960.5
NC_010572:1293786:129721412972141297921708Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein4e-0857.8
NC_012880:3748665:376694937669493767524576Dickeya dadantii Ech703, complete genomeNUDIX hydrolase5e-0857.8
NC_013521:107937:124163124163124873711Sanguibacter keddieii DSM 10542, complete genomeprotein containing C-terminal region of TrgB protein5e-0857.8
NC_014377:1227850:124090112409011241443543Thermosediminibacter oceani DSM 16646 chromosome, complete genomeNUDIX hydrolase6e-0857.4
NC_017186:5184000:519829351982935198850558Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein2e-0755.8
NC_014318:5183975:519825951982595198816558Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein2e-0755.8
NC_006155:3237990:325774432577443258367624Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein2e-0755.5
NC_010634:3155741:317525631752563175852597Yersinia pseudotuberculosis PB1/+, complete genomeNUDIX hydrolase3e-0755.5