Pre_GI: BLASTP Hits

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Query: NC_004578:5269194:5272223 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5272223, End: 5273314, Length: 1092

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:5127414:5129769512976951309111143Pseudomonas syringae pv. syringae B728a, complete genomeEndonuclease/exonuclease/phosphatase9e-179626
NC_008508:2572450:2573087257308725741751089Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,Metal-dependent hydrolase2e-67256
NC_008510:2605500:2606355260635526074431089Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,Metal-dependent hydrolase2e-67256
NC_007677:3316540:333542333354233336385963Salinibacter ruber DSM 13855, complete genomeendonuclease/exonuclease/phosphatase family protein, putative5e-1685.5
NC_015711:3122000:312320531232053124071867Myxococcus fulvus HW-1 chromosome, complete genomeendonuclease/exonuclease/phosphatase family protein3e-0963.2