Pre_GI: BLASTP Hits

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Query: NC_004578:5269194:5269827 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5269827, End: 5270303, Length: 477

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:5127414:512741451274145127890477Pseudomonas syringae pv. syringae B728a, complete genomeProtein of unknown function DUF884e-86316
NC_008700:3692333:369680336968033697276474Shewanella amazonensis SB2B, complete genomeconserved hypothetical protein9e-53205
NC_017270:1755552:178979117897911790264474Vibrio cholerae LMA3984-4 chromosome chromosome I, completehypothetical protein1e-43174
NC_012668:1688500:169337816933781693851474Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein1e-43174
NC_019977:1353332:137330813733081373826519Methanomethylovorans hollandica DSM 15978, complete genomehypothetical protein5e-27119
NC_013158:200424:221730221730222227498Halorhabdus utahensis DSM 12940, complete genomeprotein of unknown function DUF881e-1789
NC_019748:42358:632126321263820609Stanieria cyanosphaera PCC 7437, complete genomeprotein of unknown function DUF881e-1582.4
NC_017082:5789534:580661658066165807233618Bradyrhizobium sp. S23321, complete genomehypothetical protein2e-1168.6
NC_006576:2328427:235207723520772352637561Synechococcus elongatus PCC 6301, complete genomehypothetical protein6e-1166.6
NC_011060:459615:478747478747479610864Pelodictyon phaeoclathratiforme BU-1, complete genomeprotein of unknown function DUF881e-0755.8
NC_010730:578493:5784935784935803231831Sulfurihydrogenibium sp. YO3AOP1, complete genome8e-0752.8