Pre_GI: BLASTP Hits

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Query: NC_004578:5192110:5214210 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5214210, End: 5215568, Length: 1359

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:1636875:1673655167365516750011347Pseudomonas syringae pv. syringae B728a, complete genomeCl- channel, voltage gated0820
NC_012660:2045398:2080357208035720817031347Pseudomonas fluorescens SBW25 chromosome, complete genomeputative chloride transporter-like membrane protein0802
NC_010002:1879220:1925073192507319263681296Delftia acidovorans SPH-1, complete genomeChloride channel core1e-162573
NC_005085:2609934:2611860261186026131761317Chromobacterium violaceum ATCC 12472, complete genomeprobable chloride channel protein EriC7e-121434
NC_015510:1012195:1028814102881410301211308Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeCl- channel voltage-gated family protein4e-103375
NC_013732:136673:1412531412531426111359Spirosoma linguale DSM 74 plasmid pSLIN02, complete sequenceCl- channel voltage-gated family protein1e-86320
NC_020126:117799:1370821370821383951314Myxococcus stipitatus DSM 14675, complete genomeCl- channel voltage-gated family protein2e-84313
NC_016609:1774259:1775725177572517770801356Niastella koreensis GR20-10 chromosome, complete genomeCl- channel voltage-gated family protein5e-84311
NC_003366:728859:7317577317577330701314Clostridium perfringens str. 13, complete genomehypothetical protein6e-83308
NC_008261:676000:6791236791236804361314Clostridium perfringens ATCC 13124, complete genomevoltage-gated chloride channel family protein2e-82306
NC_008262:654000:6569946569946583071314Clostridium perfringens SM101, complete genomeVoltage gated chloride channel family3e-82306
NC_010674:1124431:1125509112550911267651257Clostridium botulinum B str. Eklund 17B, complete genomevoltage gated chloride channel family2e-59230
NC_010723:1084000:1086625108662510878811257Clostridium botulinum E3 str. Alaska E43, complete genomevoltage gated chloride channel family3e-59229
NC_013928:797714:8059268059268071461221Streptococcus mutans NN2025, complete genomepermease6e-48192
NC_020541:2487427:2487427248742724888151389Rhodanobacter sp. 2APBS1, complete genomechloride channel protein EriC1e-44181
NC_013928:797714:8072328072328084521221Streptococcus mutans NN2025, complete genomepermease2e-38160
NC_012926:1496510:1517504151750415187181215Streptococcus suis BM407 chromosome, complete genomevoltage gated chloride channel protein8e-32138
NC_012924:1446190:1467165146716514683791215Streptococcus suis SC84, complete genomevoltage gated chloride channel protein8e-32138
NC_009443:1445936:1466904146690414681181215Streptococcus suis 98HAH33, complete genomehypothetical protein8e-32138
NC_009442:1446508:1467483146748314686971215Streptococcus suis 05ZYH33 chromosome, complete genomehypothetical protein8e-32138
NC_012925:1357783:1378756137875613799701215Streptococcus suis P1/7, complete genomevoltage gated chloride channel protein8e-32138
NC_013410:2586500:2608776260877626101821407Fibrobacter succinogenes subsp. succinogenes S85 chromosome,Cl- channel voltage-gated family protein3e-24113
NC_011835:813345:8340788340788356491572Bifidobacterium animalis subsp. lactis AD011 chromosome, completevoltage-gated chloride channel family protein7e-23108
NC_017214:379728:4004464004464021791734Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeChloride channel protein6e-23108
NC_017215:1687161:1707896170789617096291734Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,Chloride channel protein6e-23108
NC_012814:1682500:1703308170330817049661659Bifidobacterium animalis subsp. lactis Bl-04, complete genomevoltage gated chloride channel family protein6e-23108
NC_012815:1682872:1703026170302617046841659Bifidobacterium animalis subsp. lactis DSM 10140, complete genomevoltage gated chloride channel family protein6e-23108
NC_017216:1682219:1702954170295417046121659Bifidobacterium animalis subsp. lactis BLC1, complete genomechloride channel protein EriC6e-23108
NC_017217:1688441:1708595170859517102531659Bifidobacterium animalis subsp. lactis V9 chromosome, completevoltage gated chloride channel family protein6e-23108
NC_015738:1858455:1879177187917718804661290Eggerthella sp. YY7918, complete genomechloride channel protein EriC1e-21104
NC_015320:1399589:1417496141749614192651770Archaeoglobus veneficus SNP6 chromosome, complete genomeCl- channel voltage-gated family protein5e-1995.9
NC_014122:393856:3987973987973999571161Methanocaldococcus infernus ME chromosome, complete genomeCl- channel voltage-gated family protein1e-1584.7
NC_002689:78297:9714297142989201779Thermoplasma volcanium GSS1, complete genomeChloride channel protein2e-1480.9
NC_012483:483425:5090275090275107451719Acidobacterium capsulatum ATCC 51196, complete genomechloride transporter, ClC family2e-1377.8
NC_014537:603564:6185926185926199591368Vulcanisaeta distributa DSM 14429 chromosome, complete genomeCl- channel voltage-gated family protein4e-1170.1
NC_002967:2194829:2209088220908822106741587Treponema denticola ATCC 35405, complete genomevoltage-gated chloride channel9e-1065.1
NC_015425:2072703:2077160207716020787521593Clostridium botulinum BKT015925 chromosome, complete genomeVoltage gated chloride channel family protein2e-0964.3
NC_014752:2087998:2089290208929020906991410Neisseria lactamica ST-640, complete genomechloride channel protein3e-0963.5
NC_013166:417862:4182924182924200671776Kangiella koreensis DSM 16069, complete genomeChloride channel core5e-0962.8
NC_008391:865340:8653408653408671271788Burkholderia cepacia AMMD chromosome 2, complete sequenceCl- channel, voltage-gated family protein1e-0861.6
NC_014761:1196669:1215782121578212175481767Oceanithermus profundus DSM 14977 chromosome, complete genomecl- channel voltage-gated family protein2e-0861.2
NC_014640:6971000:6989479698947969908461368Achromobacter xylosoxidans A8 chromosome, complete genomevoltage gated chloride channel family protein 32e-0861.2
NC_011761:2785660:2815696281569628170991404Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completevoltage-gated chloride channel2e-0860.8
NC_011206:2685499:2715535271553527169591425Acidithiobacillus ferrooxidans ATCC 53993, complete genomeChloride channel core2e-0860.8
NC_011126:555483:5620315620315634581428Hydrogenobaculum sp. Y04AAS1, complete genomeChloride channel core5e-0859.3
NC_008752:4147715:4157755415775541589991245Acidovorax avenae subsp. citrulli AAC00-1, complete genomeCl- channel, voltage-gated family protein1e-0758.5
NC_015138:4175831:4182478418247841839531476Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeCl- channel voltage-gated family protein2e-0757.8
NC_014562:2871765:2899212289921229009001689Pantoea vagans C9-1 chromosome, complete genomePutative ClC family transporter3e-0757
NC_008369:82515:9647596475978931419Francisella tularensis subsp. holarctica OSU18, complete genomeCLC family chloride ion channel antiporter7e-0755.8
NC_017168:3192817:3208417320841732097091293Yersinia pestis A1122 chromosome, complete genomeputative voltage-gated ClC-type chloride channel ClcB7e-0755.8
NC_009257:5615:6084608475021419Francisella tularensis subsp. tularensis WY96-3418 chromosome,chloride channel protein8e-0755.5
NC_009749:77583:9653396533978761344Francisella tularensis subsp. holarctica FTA, complete genomechloride channel protein1e-0655.1
NC_008245:1845525:1864990186499018665191530Francisella tularensis subsp. tularensis FSC 198, complete genomeVoltage-gated ClC-type chloride channel clcA1e-0654.7
NC_016937:1850382:1863731186373118665652835Francisella tularensis subsp. tularensis TI0902 chromosome,Thermostable carboxypeptidase 12e-0654.3
NC_009513:1065704:1067263106726310685221260Lactobacillus reuteri F275, complete genomeChloride channel, core3e-0653.9
NC_014532:2298628:2300945230094523027231779Halomonas elongata DSM 2581, complete genomeK03281 chloride channel protein, CIC family4e-0653.1
NC_015697:33665:3366533665349241260Lactobacillus reuteri SD2112 chromosome, complete genomechloride channel core4e-0653.1
NC_007508:4476726:4476726447672644785221797Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeVoltage gated chloride channel family protein6e-0652.4
NC_004663:5099845:5119138511913851209341797Bacteroides thetaiotaomicron VPI-5482, complete genomeputative chloride channel protein6e-0652.4
NC_003902:3514000:3516449351644935182481800Xanthomonas campestris pv. campestris str. ATCC 33913, completechloride channel7e-0652.4