Pre_GI: BLASTP Hits

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Query: NC_004578:5192110:5213444 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5213444, End: 5213767, Length: 324

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012660:2045398:207958820795882079911324Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein3e-53206
NC_014733:2851984:778077808091312Methylovorus sp. MP688 chromosome, complete genomehypothetical protein1e-1892
NC_011146:2916223:292723629272362927553318Geobacter bemidjiensis Bem, complete genomehypothetical protein1e-1478.6
NC_007005:1636875:167288916728891673212324Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein2e-57220
NC_004578:5192110:521580552158055216128324Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein5e-1992.8
NC_011883:1314624:132638313263831326709327Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,hypothetical protein1e-1582
NC_007005:1636875:167525016752501675573324Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein5e-1992.8
NC_014972:1923035:192459719245971924914318Desulfobulbus propionicus DSM 2032 chromosome, complete genomehypothetical protein4e-1683.2
NC_017986:331610:343812343812344141330Pseudomonas putida ND6 chromosome, complete genomehypothetical protein5e-2096.3
NC_012660:2045398:208195220819522082275324Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein1e-1891.7
NC_005090:1082213:109608110960811096386306Wolinella succinogenes DSM 1740, complete genomehypothetical protein3e-1270.5
NC_013851:859396:860898860898861227330Allochromatium vinosum DSM 180 chromosome, complete genomeprotein of unknown function DUF1906e-0959.3