Pre_GI: BLASTP Hits

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Query: NC_004578:5192110:5208901 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5208901, End: 5210070, Length: 1170

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:1636875:1668346166834616695151170Pseudomonas syringae pv. syringae B728a, complete genomeC4-dicarboxylate transporter/malic acid transport protein0656
NC_012660:2045398:2072409207240920735781170Pseudomonas fluorescens SBW25 chromosome, complete genomeputative transporter-like membrane protein3e-170598
NC_016816:4129299:4160801416080141619611161Pantoea ananatis LMG 5342, complete genomeC4-dicarboxylate transporter/malic acid transport family protein1e-122439
NC_014304:77715:9694096940981001161Erwinia billingiae Eb661 plasmid pEB102, complete sequenceC4-dicarboxylate transporter/malic acid transport protein2e-121436
NC_014375:1242750:1254684125468412558801197Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeC4-dicarboxylate transporter/malic acid transport protein8e-116417
NC_009439:442890:4857414857414868951155Pseudomonas mendocina ymp, complete genomeC4-dicarboxylate transporter/malic acid transport protein2e-69263
NC_015850:1614965:1621547162154716227071161Acidithiobacillus caldus SM-1 chromosome, complete genomeC4-dicarboxylate transporter/malic acid transport protein2e-54213
NC_008537:12500:1447314473156601188Arthrobacter sp. FB24 plasmid 1, complete sequenceC4-dicarboxylate transporter/malic acid transport protein1e-32140
NC_013887:1383127:1395351139535113963731023Methanocaldococcus sp. FS406-22 chromosome, complete genomeC4-dicarboxylate transporter/malic acid transport protein5e-23108
NC_021184:3149000:3166919316691931679711053Desulfotomaculum gibsoniae DSM 7213, complete genomeC4-dicarboxylate transporter/malic acid transport protein7e-23108
NC_000868:757823:7603067603067613251020Pyrococcus abyssi GE5, complete genomeC4-dicarboxylate transporter, putative2e-21103
NC_015474:1794879:1801166180116618021851020Pyrococcus sp. NA2 chromosome, complete genomeC4-dicarboxylate transporter, putative2e-20100
NC_014659:3654979:3677057367705736781211065Rhodococcus equi 103S, complete genomeC4-dicarboxylate transporter/malic acid transport protein6e-1582.4