Pre_GI: BLASTP Hits

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Query: NC_004578:5192110:5206026 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5206026, End: 5206406, Length: 381

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:1636875:166547216654721665852381Pseudomonas syringae pv. syringae B728a, complete genomeSecreted repeat of unknown function3e-68256
NC_012660:2045398:206464120646412065021381Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein9e-62234
NC_010170:3908500:391109239110923911472381Bordetella petrii, complete genomeputative secreted protein5e-31132
NC_014910:2015627:201703520170352017400366Alicycliphilus denitrificans BC chromosome, complete genomesecreted repeat protein6e-30129
NC_011992:1318691:131922313192231319588366Acidovorax ebreus TPSY, complete genomeSecreted repeat of unknown function5e-27119
NC_020209:4643901:466293746629374663314378Pseudomonas poae RE*1-1-14, complete genomehypothetical protein9e-25112
NC_013526:911909:925201925201925776576Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeSecreted repeat of unknown function6e-1889.4
NC_008537:12500:126261262613111486Arthrobacter sp. FB24 plasmid 1, complete sequenceSecreted repeat of unknown function2e-1684.3
NC_009921:6447151:645771164577116458301591Frankia sp. EAN1pec, complete genomeSecreted repeat of unknown function7e-1372.8