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Query: NC_004578:5192110:5201523 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5201523, End: 5203982, Length: 2460

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011740:448000:4555274555274579772451Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein from phage origin, putative COG0542, putative COG1220, putative coiled coil2e-157556
NC_004547:913553:9230689230689255122445Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein2e-148526
NC_013720:361785:3647273647273671472421Pirellula staleyi DSM 6068, complete genomehypothetical protein1e-53211
NC_013440:1317982:1327385132738513300872703Haliangium ochraceum DSM 14365, complete genomeprotein of unknown function DUF4501e-33145
NC_006351:520500:5298685298685322912424Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein1e-27125
NC_010162:7824878:7835455783545578380432589Sorangium cellulosum 'So ce 56', complete genomehypothetical protein1e-22108
NC_015663:770485:7777967777967802462451Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein3e-22107
NC_020453:7826358:7840706784070678432192514Agromonas oligotrophica S58 DNA, complete genomehypothetical protein4e-21103