Pre_GI: BLASTP Hits

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Query: NC_004578:5192110:5198455 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5198455, End: 5200692, Length: 2238

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020829:940692:9877309877309899672238Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein01186
NC_005773:4899252:4904499490449949067332235Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein01159
NC_016816:1545354:1555375155537515574082034Pantoea ananatis LMG 5342, complete genomeDNA-binding protein2e-47191
NC_009524:1369395:1377817137781713797841968Psychrobacter sp. PRwf-1 chromosome, complete genomehypothetical protein4e-46187
NC_010322:583842:5922595922595943282070Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein2e-43177
NC_015458:2998000:3005609300560930076182010Pusillimonas sp. T7-7 chromosome, complete genomeintegrase family protein9e-43175
NC_020829:636773:6446296446296466111983Pseudomonas denitrificans ATCC 13867, complete genomeintegrase family protein1e-41172
NC_011741:4570498:4583846458384645857201875Escherichia coli IAI1 chromosome, complete genomeputative integrase3e-39164
CU928160:4570498:4583846458384645857201875Escherichia coli IAI1 chromosome, complete genomeputative integrase3e-39164
NC_015726:406450:4168814168814189592079Cupriavidus necator N-1 chromosome 1, complete sequenceintegrase1e-38162
NC_009436:3117661:3141163314116331430371875Enterobacter sp. 638, complete genomeDNA-binding protein1e-37158
NC_010067:191190:2029042029042047781875Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-37156
NC_008800:1090000:1101870110187011037291860Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,DNA-binding protein6e-36152
NC_014640:6815264:6837004683700468390132010Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein1e-30135
NC_004547:1174650:1189894118989411918581965Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase4e-29130
NC_005773:4282840:4292503429250342943741872Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein3e-28127
NC_011663:674069:6792846792846813652082Shewanella baltica OS223 chromosome, complete genomehypothetical protein8e-28125
NC_009665:639914:6451236451236472042082Shewanella baltica OS185 chromosome, complete genomehypothetical protein8e-28125
NC_014394:2577949:2593443259344325953741932Gallionella capsiferriformans ES-2 chromosome, complete genomehypothetical protein7e-27123
NC_015563:2018038:2028877202887720309462070Delftia sp. Cs1-4 chromosome, complete genomeintegrase family protein1e-20102
NC_003919:3396136:3406559340655934084091851Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein5e-20100
NC_013008:3525428:3553230355323035548611632Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-1997.4
NC_011353:3573641:3598505359850536001361632Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeDNA-binding protein3e-1997.4
NC_002695:3468873:3494269349426934959001632Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-1997.4
NC_013941:3300000:3332001333200133336321632Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDNA-binding protein4e-1997.1
NC_012917:1840172:1853169185316918548541686Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeDNA-binding protein5e-1997.1
NC_002655:3538656:3561775356177535631871413Escherichia coli O157:H7 EDL933, complete genomehypothetical protein7e-1996.3
NC_008740:2563278:2577558257755825797052148Marinobacter aquaeolei VT8, complete genomehypothetical protein3e-1894
NC_014562:2563466:2591394259139425932321839Pantoea vagans C9-1 chromosome, complete genomeTransposase B from transposon Tn5542e-1688.6
NC_013421:1819036:1852002185200218536211620Pectobacterium wasabiae WPP163, complete genomehypothetical protein1e-1585.9
NC_011283:4438500:4459610445961044612411632Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein1e-1482.4
NC_016514:3573400:3595476359547635968071332Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein1e-1378.6
NC_009792:3665369:3685946368594636876131668Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-1377.4
NC_012880:3421500:3435298343529834369561659Dickeya dadantii Ech703, complete genomehypothetical protein8e-1376.3
NC_014752:834616:846608846608847522915Neisseria lactamica ST-640, complete genomehypothetical protein5e-1170.5
NC_014311:3076519:3113502311350231155562055Ralstonia solanacearum PSI07 chromosome, complete genomephage integrase4e-1067.4
NC_010571:2943369:2953324295332429553392016Opitutus terrae PB90-1, complete genomehypothetical protein3e-0861.2
NC_010506:4873487:4883679488367948859342256Shewanella woodyi ATCC 51908, complete genomehypothetical protein5e-0860.5