Pre_GI: BLASTP Hits

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Query: NC_004578:5192110:5195601 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5195601, End: 5196866, Length: 1266

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020829:940692:9915479915479928121266Pseudomonas denitrificans ATCC 13867, complete genomephage integrase family site specific recombinase0783
NC_005773:4899252:4901655490165549029171263Pseudomonas syringae pv. phaseolicola 1448A, complete genomesite-specific recombinase, phage integrase family0769
NC_013008:3525428:3556173355617335573781206Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-34145
NC_013941:3300000:3334944333494433361491206Escherichia coli O55:H7 str. CB9615 chromosome, complete genomesite specific recombinase1e-33144
NC_011353:3573641:3601448360144836026531206Escherichia coli O157:H7 str. EC4115 chromosome, complete genome1e-33144
NC_002695:3468873:3497212349721234984171206Escherichia coli O157:H7 str. Sakai, complete genomeputative site specific recombinase1e-33144
NC_002655:3538656:3564664356466435657071044Escherichia coli O157:H7 EDL933, complete genomehypothetical protein3e-30133
NC_011283:4438500:4462553446255344637581206Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase9e-30131
NC_013421:1819036:1849485184948518506901206Pectobacterium wasabiae WPP163, complete genomeintegrase family protein5e-29129
NC_010322:583842:5894255894255907111287Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein3e-27123
NC_015726:406450:4141604141604153561197Cupriavidus necator N-1 chromosome 1, complete sequencetyrosine-based site-specific recombinase CMGI-73e-27123
NC_012880:3421500:3438268343826834394911224Dickeya dadantii Ech703, complete genomeintegrase family protein9e-27121
NC_014640:6815264:6840529684052968417851257Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein1e-25117
NC_004547:1174650:1187197118719711884081212Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase1e-25117
NC_016816:1545354:1558942155894215601501209Pantoea ananatis LMG 5342, complete genomesite-specific recombinase, phage integrase family3e-25116
NC_009436:3117661:3144337314433731455391203Enterobacter sp. 638, complete genomephage integrase family protein3e-24113
NC_016514:3573400:3598096359809635993641269Enterobacter cloacae EcWSU1 chromosome, complete genometyrosine recombinase XerD3e-22106
NC_020829:636773:6418616418616431711311Pseudomonas denitrificans ATCC 13867, complete genomeintegrase4e-22106
NC_009524:1369395:1381372138137213825621191Psychrobacter sp. PRwf-1 chromosome, complete genomephage integrase family protein7e-22105
NC_015458:2998000:3009145300914530104251281Pusillimonas sp. T7-7 chromosome, complete genomeintegrase family protein5e-22105
NC_008800:1090000:1099313109931311005181206Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative integrase/recombinase1e-21104
NC_003919:3396136:3409969340996934112881320Xanthomonas axonopodis pv. citri str. 306, complete genomeintegrase/recombinase5e-21102
NC_012917:1840172:1850685185068518518751191Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein3e-2099.8
CU928160:4570498:4581350458135045825521203Escherichia coli IAI1 chromosome, complete genomeputative integrase4e-2099.4
NC_011741:4570498:4581350458135045825521203Escherichia coli IAI1 chromosome, complete genomeputative integrase4e-2099.4
NC_010067:191190:2005492005492016041056Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein5e-2099
NC_009792:3665369:3688867368886736899851119Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-1995.5
NC_020209:1949500:1955255195525519565081254Pseudomonas poae RE*1-1-14, complete genomesite-specific recombinase, phage integrase family protein3e-1893.2
NC_015563:2018038:2032460203246020336111152Delftia sp. Cs1-4 chromosome, complete genomeintegrase family protein7e-1892
NC_014562:2563466:259475725947572595506750Pantoea vagans C9-1 chromosome, complete genomeTyrosine recombinase xerD2e-1790.5
NC_010506:4873487:4880722488072248820231302Shewanella woodyi ATCC 51908, complete genomephage integrase family protein2e-1687.4
NC_004603:3080614:3098708309870830999791272Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein1e-1584.7
NC_011663:674069:6764326764326777541323Shewanella baltica OS223 chromosome, complete genomeintegrase family protein1e-1584.7
NC_009665:639914:6422716422716435931323Shewanella baltica OS185 chromosome, complete genomephage integrase family protein1e-1584.7
NC_006350:595893:6374336374336386111179Burkholderia pseudomallei K96243 chromosome 1, complete sequencephage integrase family protein3e-1583.2
NC_010571:2943369:2950545295054529517831239Opitutus terrae PB90-1, complete genomeintegrase family protein1e-1481.3
NC_014752:834616:874228874228875190963Neisseria lactamica ST-640, complete genomehypothetical protein2e-1480.9
NC_004129:3452885:3461943346194334631661224Pseudomonas fluorescens Pf-5, complete genomesite-specific recombinase, phage integrase family1e-1378.2
NC_007510:1959883:2015945201594520170631119Burkholderia sp. 383 chromosome 1, complete sequencePhage integrase2e-1273.9
NC_017986:2548720:2556613255661325578421230Pseudomonas putida ND6 chromosome, complete genomephage integrase family protein3e-1273.6
NC_014366:478000:4841234841234853041182Gamma proteobacterium HdN1, complete genomephage integrase7e-1272.4
NC_008577:2604281:2607529260752926088511323Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein1e-1171.6
NC_014311:3076519:3117128311712831183451218Ralstonia solanacearum PSI07 chromosome, complete genomephage integrase1e-1171.6
NC_007969:1664500:1677149167714916785371389Psychrobacter cryohalolentis K5, complete genomephage integrase3e-1066.6
NC_005773:4282840:429044642904464291432987Pseudomonas syringae pv. phaseolicola 1448A, complete genomePhage integrase family domain protein5e-1065.9
NC_005773:3220500:3232787323278732339951209Pseudomonas syringae pv. phaseolicola 1448A, complete genomeprophage PSPPH05, site-specific recombinase, phage integrase family8e-0962
NC_008740:2563278:2581229258122925825151287Marinobacter aquaeolei VT8, complete genomephage integrase family protein6e-0858.9
NC_020410:1684192:169160116916011692218618Bacillus amyloliquefaciens subsp. plantarum UCMB5036 complete1e-0758.5