Pre_GI: BLASTP Hits

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Query: NC_004578:5192110:5193212 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5193212, End: 5193709, Length: 498

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:4899252:489925248992524899749498Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscription elongation factor GreB3e-70263
NC_011992:889985:889985889985890545561Acidovorax ebreus TPSY, complete genometranscription elongation factor GreB9e-2095.9
NC_010725:4618000:461800146180014618465465Methylobacterium populi BJ001, complete genomeGreA/GreB family elongation factor3e-1891.3
NC_009485:1222697:124178712417871242269483Bradyrhizobium sp. BTAi1 chromosome, complete genometranscription elongation factor regulatory protein8e-1889.7
NC_015580:3252534:325459032545903255069480Novosphingobium sp. PP1Y, complete genomeGreA/GreB family elongation factor4e-1684
NC_008752:3955327:395767839576783958244567Acidovorax avenae subsp. citrulli AAC00-1, complete genometranscription elongation factor GreB5e-1683.6
NC_008095:3719441:373264237326423733172531Myxococcus xanthus DK 1622, complete genometranscription elongation factor GreB2e-1581.6
NC_008825:2889933:289348728934872894128642Methylibium petroleiphilum PM1, complete genometranscription elongation factor2e-1478.2
NC_008343:2020785:203505320350532035562510Granulibacter bethesdensis CGDNIH1, complete genometranscription elongation factor greB3e-1374.3
NC_013730:1342500:135503013550301355545516Spirosoma linguale DSM 74, complete genomeGreA/GreB family elongation factor5e-1167
NC_008343:1548020:157294915729491573443495Granulibacter bethesdensis CGDNIH1, complete genometranscription elongation factor greB1e-1065.5
NC_009654:4253431:425643942564394257029591Marinomonas sp. MWYL1, complete genometranscription elongation factor GreB5e-1063.5
NC_015422:2806832:280798628079862808462477Alicycliphilus denitrificans K601 chromosome, complete genometranscription elongation factor GreA8e-1063.2
NC_015318:1151422:117480011748001175270471Hippea maritima DSM 10411 chromosome, complete genometranscription elongation factor GreA2e-0962
NC_012997:3185248:320821132082113208729519Teredinibacter turnerae T7901, complete genometranscription elongation factor GreB2e-0961.6
NC_009052:144619:155332155332155841510Shewanella baltica OS155, complete genometranscription elongation factor GreB6e-0960.1
NC_015977:3324000:334119633411963341681486Roseburia hominis A2-183 chromosome, complete genometranscription elongation factor GreA1e-0859.3
NC_017271:3057161:306004130600413060547507Xanthomonas campestris pv. raphani 756C chromosome, completetranscription elongation factor GreB9e-0959.3
NC_005296:4574213:461225246122524612728477Rhodopseudomonas palustris CGA009, complete genometranscription elongation factor GreA2e-0858.5
NC_011004:4947980:496777749677774968253477Rhodopseudomonas palustris TIE-1, complete genometranscription elongation factor GreA2e-0858.5
NC_004129:957890:963439963439963915477Pseudomonas fluorescens Pf-5, complete genometranscription elongation factor GreA2e-0858.5
NC_010524:3094303:310650431065043106980477Leptothrix cholodnii SP-6, complete genometranscription elongation factor GreA2e-0858.2
NC_012416:531772:536755536755537249495Wolbachia sp. wRi, complete genometranscription elongation factor GreA4e-0857.4
NC_021150:4311902:433027843302784330754477Azotobacter vinelandii CA6, complete genometranscription elongation factor GreA4e-0857.4
NC_012560:4311906:433028243302824330758477Azotobacter vinelandii DJ, complete genomeProkaryotic transcription elongation factor GreA4e-0857.4
NC_012880:3915500:392881439288143929290477Dickeya dadantii Ech703, complete genometranscription elongation factor GreA5e-0857
NC_020063:528296:528296528296528772477Enterobacteriaceae bacterium strain FGI 57, complete genometranscription elongation factor GreA1e-0756.2
NC_006833:409599:414560414560415054495Wolbachia endosymbiont strain TRS of Brugia malayi, completeTranscription elongation factor, GreA8e-0856.2
NC_014831:149626:155894155894156373480Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscription elongation factor GreA1e-0755.8
NC_014960:1735786:178532517853251785792468Anaerolinea thermophila UNI-1, complete genometranscription elongation factor GreA2e-0755.5
NC_015572:3091707:311880131188013119283483Methylomonas methanica MC09 chromosome, complete genometranscription elongation factor GreB2e-0755.1
NC_002978:618723:641759641759642253495Wolbachia endosymbiont of Drosophila melanogaster, complete genometranscription elongation factor GreA2e-0754.7
NC_009465:813816:831932831932832411480Candidatus Vesicomyosocius okutanii HA, complete genometranscription elongation factor GreA6e-0753.5
NC_020995:2255521:225885522588552259334480Enterococcus casseliflavus EC20, complete genometranscription elongation factor greA6e-0753.5
NC_018664:2459994:247645724764572476933477Clostridium acidurici 9a chromosome, complete genometranscription elongation factor GreA7e-0753.1
NC_015572:3091707:312404431240443124382339Methylomonas methanica MC09 chromosome, complete genomeGreA/GreB family elongation factor1e-0652.8
NC_015738:838715:853221853221853691471Eggerthella sp. YY7918, complete genomehypothetical protein1e-0652.4
NC_015555:277364:293664293664294137474Thermoanaerobacterium xylanolyticum LX-11 chromosome, completetranscription elongation factor GreA1e-0652.4
NC_013716:4885776:489403748940374894513477Citrobacter rodentium ICC168, complete genometranscription elongation factor3e-0650.8
NC_010981:1243888:126900012690001269494495Wolbachia pipientis, complete genometranscription elongation factor GreA4e-0650.8
NC_014378:131810:133032133032133505474Acetohalobium arabaticum DSM 5501 chromosome, complete genometranscription elongation factor GreA6e-0650.1
NC_015968:4117835:416070141607014161177477Enterobacter asburiae LF7a chromosome, complete genometranscription elongation factor GreA8e-0649.7