Pre_GI: BLASTP Hits

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Query: NC_004578:4869673:4873769 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4873769, End: 4875589, Length: 1821

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:4061372:4074346407434640759471602Pseudomonas syringae pv. tomato str. DC3000, complete genomesite-specific recombinase, phage integrase family2e-146520
NC_016616:1182125:1196083119608311979931911Dechlorosoma suillum PS chromosome, complete genomephage integrase family protein7e-53209
NC_010087:376918:4203174203174222691953Burkholderia multivorans ATCC 17616 chromosome 3, completesite-specific recombinase, phage integrase family protein3e-43177
NC_008740:1357312:137514413751441375854711Marinobacter aquaeolei VT8, complete genomephage integrase family protein7e-37155
NC_008740:1357312:1372318137231813734961179Marinobacter aquaeolei VT8, complete genomephage integrase family protein5e-31136
NC_014541:1753776:1766341176634117683742034Ferrimonas balearica DSM 9799 chromosome, complete genomehypothetical protein1e-1482
NC_009668:445134:4896474896474917912145Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequencehypothetical protein4e-0757