Pre_GI: BLASTP Hits

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Query: NC_004578:4708220:4726006 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4726006, End: 4728249, Length: 2244

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013730:7118798:7156825715682571591782354Spirosoma linguale DSM 74, complete genome1e-1379.3
NC_017150:2290681:2310637231063723127722136Acetobacter pasteurianus IFO 3283-01-42C, complete genomealcohol dehydrogenase large subunit2e-25118
NC_017111:2383388:2401453240145324035882136Acetobacter pasteurianus IFO 3283-32, complete genomealcohol dehydrogenase large subunit2e-25118
NC_017121:2383375:2401440240144024035752136Acetobacter pasteurianus IFO 3283-07, complete genomealcohol dehydrogenase large subunit2e-25118
NC_013209:2384826:2402891240289124050262136Acetobacter pasteurianus IFO 3283-01, complete genomealcohol dehydrogenase large subunit2e-25118
NC_017125:2383467:2404078240407824062132136Acetobacter pasteurianus IFO 3283-22, complete genomealcohol dehydrogenase large subunit2e-25118
NC_017100:2383487:2404098240409824062332136Acetobacter pasteurianus IFO 3283-03, complete genomealcohol dehydrogenase large subunit2e-25118
NC_017146:2383509:2404120240412024062552136Acetobacter pasteurianus IFO 3283-26, complete genomealcohol dehydrogenase large subunit2e-25118
NC_017108:2383370:2401435240143524035702136Acetobacter pasteurianus IFO 3283-12, complete genomealcohol dehydrogenase large subunit2e-25118
NC_010170:4800000:4901586490158649039912406Bordetella petrii, complete genomegcd0656
NC_017125:2339806:2346404234640423488422439Acetobacter pasteurianus IFO 3283-22, complete genomeglucose dehydrogenase5e-138492
NC_017100:2339826:2346424234642423488622439Acetobacter pasteurianus IFO 3283-03, complete genomeglucose dehydrogenase5e-138492
NC_017146:2339848:2346446234644623488842439Acetobacter pasteurianus IFO 3283-26, complete genomeglucose dehydrogenase5e-138492
NC_017108:2337163:2343761234376123461992439Acetobacter pasteurianus IFO 3283-12, complete genomeglucose dehydrogenase5e-138492
NC_017150:2244950:2251548225154822539862439Acetobacter pasteurianus IFO 3283-01-42C, complete genomeglucose dehydrogenase5e-138492
NC_017111:2337181:2343779234377923462172439Acetobacter pasteurianus IFO 3283-32, complete genomeglucose dehydrogenase5e-138492
NC_019974:1689486:1709960170996017116781719Natronococcus occultus SP4, complete genomeglucose dehydrogenase7e-1169.7
NC_017121:2337168:2343766234376623462042439Acetobacter pasteurianus IFO 3283-07, complete genomeglucose dehydrogenase5e-138492
NC_013209:2337204:2343802234380223462402439Acetobacter pasteurianus IFO 3283-01, complete genomeglucose dehydrogenase, methanol dehydrogenase subunit 15e-138492
NC_011365:2637567:2638516263851626409392424Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomemembrane-bound PQQ-dependent dehydrogenase5e-146518
NC_015594:410454:4176144176144199772364Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completemembrane-bound PQQ-dependent dehydrogenase glucose/quinate/shikimate family4e-145515
NC_014931:6203872:6240659624065962431422484Variovorax paradoxus EPS chromosome, complete genomemembrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family0751
NC_013850:2103469:2124926212492621273552430Klebsiella variicola At-22 chromosome, complete genomemembrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family2e-140499
NC_015138:1582458:1595213159521315976332421Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completemembrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family2e-140500
NC_011004:4073916:4108566410856641109682403Rhodopseudomonas palustris TIE-1, complete genomemembrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family2e-136487
NC_015556:4074367:4077535407753540799372403Pseudomonas fulva 12-X chromosome, complete genomemembrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family0711
NC_012791:721813:7593067593067611471842Variovorax paradoxus S110 chromosome 1, complete genomePQQ-dependent dehydrogenase, methanol/ethanol family4e-20100
NC_012792:962292:9784659784659802581794Variovorax paradoxus S110 chromosome 2, complete genomePQQ-dependent dehydrogenase, methanol/ethanol family2e-21104
NC_011666:2435438:2449517244951724513221806Methylocella silvestris BL2, complete genomePQQ-dependent dehydrogenase, methanol/ethanol family2e-21105
NC_014733:1857020:1872653187265318743441692Methylovorus sp. MP688 chromosome, complete genomepqq-dependent dehydrogenase, methanol/ethanol family1e-1585.5
NC_014931:6203872:6226203622620362283112109Variovorax paradoxus EPS chromosome, complete genomePQQ-dependent dehydrogenase, methanol/ethanol family4e-34147
NC_010172:57500:1033131033131051301818Methylobacterium extorquens PA1, complete genomePQQ-dependent dehydrogenase, methanol/ethanol family2e-23111
NC_007761:3564449:3568090356809035704202331Rhizobium etli CFN 42, complete genomeputative pyrroloquinoline-quinone-dependent quinate dehydrogenase protein3e-139496
NC_015379:2505233:2507009250700925094442436Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative quinoprotein glucose dehydrogenase2e-134480
NC_010172:5036385:5053395505339550552331839Methylobacterium extorquens PA1, complete genomePyrrolo-quinoline quinone3e-45184
NC_008048:389645:3906863906863928692184Sphingopyxis alaskensis RB2256, complete genomePyrrolo-quinoline quinone6e-24113
NC_009832:5369566:5367158536715853695692412Serratia proteamaculans 568, complete genomePyrrolo-quinoline quinone8e-173607
NC_007947:2140000:2183348218334821851471800Methylobacillus flagellatus KT, complete genomePyrrolo-quinoline quinone5e-1583.6
NC_007947:2447635:2468602246860224704791878Methylobacillus flagellatus KT, complete genomePyrrolo-quinoline quinone2e-0964.7
NC_007947:1556437:1560474156047415623241851Methylobacillus flagellatus KT, complete genomePyrrolo-quinoline quinone3e-1997.4
NC_008254:3143770:3143770314377031455211752Mesorhizobium sp. BNC1, complete genomePyrrolo-quinoline quinone2e-1378.6
NC_015663:4347187:4347187434718743495592373Enterobacter aerogenes KCTC 2190 chromosome, complete genomequinate dehydrogenase6e-167588
NC_014121:2090630:2090630209063020930142385Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completequinate dehydrogenase (pyrroloquinoline-quinone)6e-160565
NC_011283:2185462:2191382219138221938112430Klebsiella pneumoniae 342 chromosome, complete genomequinate/shikimate dehydrogenase (pyrroloquinoline-quinone)2e-140500
NC_020181:1057476:1073579107357910759512373Enterobacter aerogenes EA1509E, complete genomeQuinate/shikimate dehydrogenase [Pyrroloquinoline-quinone]8e-167587
NC_015976:2023540:2049909204990920520292121Sphingobium sp. SYK-6, complete genomequinohemoprotein alcohol dehydrogenase2e-27125
NC_012988:5516872:5539856553985655416941839Methylobacterium extorquens DM4, complete genomequinoprotein alcohol dehydrogenase7e-46186
NC_010125:333895:3338953338953363422448Gluconacetobacter diazotrophicus PAl 5, complete genomeQuinoprotein glucose dehydrogenase6e-146518
NC_009050:604950:6220086220086241822175Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceQuinoprotein glucose dehydrogenase2e-133477
NC_009952:442029:4608574608574626591803Dinoroseobacter shibae DFL 12, complete genomequinoprotein glucose dehydrogenase2e-27124
NC_014963:5034904:5053002505300250552302229Terriglobus saanensis SP1PR4 chromosome, complete genomeQuinoprotein glucose dehydrogenase2e-60234
NC_013956:3181421:3198900319890032013982499Pantoea ananatis LMG 20103 chromosome, complete genomeQumA6e-129461