Pre_GI: BLASTP Hits

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Query: NC_004578:4708220:4725161 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4725161, End: 4725529, Length: 369

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017270:1755552:179302717930271793242216Vibrio cholerae LMA3984-4 chromosome chromosome I, completehypothetical protein3e-2097.1
NC_012668:1688500:169040316904031690618216Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein3e-2097.1
NC_012108:1324885:133733113373311337570240Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein6e-1992.8
NC_016633:289500:293010293010293270261Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomehypothetical protein9e-1889
NC_014965:1428902:155013615501361550357222Vibrio vulnificus MO6-24/O chromosome I, complete sequencehypothetical protein1e-1788.6
NC_014965:1428902:144747414474741447695222Vibrio vulnificus MO6-24/O chromosome I, complete sequencehypothetical protein1e-1788.6
NC_005139:1784000:192641419264141926635222Vibrio vulnificus YJ016 chromosome I, complete sequencehypothetical protein1e-1788.6
NC_015497:3497680:350257635025763502878303Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomehypothetical protein2e-1787.8
NC_020063:2230000:226881422688142269092279Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein3e-1787
NC_012917:2362725:236852223685222368809288Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein9e-1785.5
NC_005966:1832066:184002818400281840264237Acinetobacter sp. ADP1, complete genomehypothetical protein4e-1683.2
NC_003910:3448983:346367834636783464007330Colwellia psychrerythraea 34H, complete genomehypothetical protein7e-1579.3
NC_015161:2018493:202348620234862024163678Deinococcus proteolyticus MRP chromosome, complete genomehypothetical protein2e-1374.7
NC_013166:82986:858248582486300477Kangiella koreensis DSM 16069, complete genomehypothetical protein3e-1270.9