Pre_GI: BLASTP Hits

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Query: NC_004578:4432983:4452671 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4452671, End: 4453456, Length: 786

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002695:1929215:1948455194845519501161662Escherichia coli O157:H7 str. Sakai, complete genomeputative terminase large subunit5e-61234
NC_012559:1685812:1689731168973116913861656Laribacter hongkongensis HLHK9, complete genomeGp797e-60230
NC_010086:810890:8306148306148323261713Burkholderia multivorans ATCC 17616 chromosome 2, completeTerminase1e-58226
NC_010805:1642978:1642978164297816446901713Burkholderia multivorans ATCC 17616 chromosome 2, completebacteriophage terminase large subunit TerL1e-58226
NC_007650:1192310:1217844121784412195861743Burkholderia thailandensis E264 chromosome II, complete sequencephage terminase, large subunit, putative1e-57223
NC_014640:4293430:4320914432091443226201707Achromobacter xylosoxidans A8 chromosome, complete genomephage terminase family protein6e-51201
NC_006371:1411335:1433806143380614353441539Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical terminase large subunit1e-46186
NC_013892:671000:6843766843766861121737Xenorhabdus bovienii SS-2004 chromosome, complete genomephage terminase, large subunit3e-0755.8