Pre_GI: BLASTP Hits

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Query: NC_004578:4432983:4432983 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4432983, End: 4433576, Length: 594

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:1738500:176250817625081763101594Pseudomonas syringae pv. syringae B728a, complete genomeNitroreductase5e-107386
NC_015856:4975815:498192749819274982664738Collimonas fungivorans Ter331 chromosome, complete genomenitroreductase family protein2e-73275
NC_015136:2282488:229066022906602291262603Burkholderia sp. CCGE1001 chromosome 1, complete sequencenitroreductase4e-60230
NC_014307:3240430:325917732591773259764588Ralstonia solanacearum CFBP2957 chromosome, complete genomenitroreductase2e-48192
NC_015634:2492771:251646125164612517048588Bacillus coagulans 2-6 chromosome, complete genomenitroreductase3e-47187
NC_014311:3348102:336217233621723362771600Ralstonia solanacearum PSI07 chromosome, complete genomenitroreductase6e-46183
NC_018145:683874:702497702497703120624Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completenitroreductase1e-43176
NC_019977:1245894:126593912659391266544606Methanomethylovorans hollandica DSM 15978, complete genomenitroreductase1e-38159
NC_012483:1567253:158986715898671590481615Acidobacterium capsulatum ATCC 51196, complete genomenitroreductase family protein8e-34143
NC_012483:483425:490641490641491255615Acidobacterium capsulatum ATCC 51196, complete genomenitroreductase family protein1e-30132
NC_016148:1877711:187981718798171880419603Thermovirga lienii DSM 17291 chromosome, complete genomenitroreductase5e-30130
NC_010407:410918:429146429146429751606Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative oxidoreductase1e-23108
NC_007484:2746078:275275127527512753206456Nitrosococcus oceani ATCC 19707, complete genomeNitroreductase4e-1994.4
NC_015732:2880801:288266328826632883205543Spirochaeta caldaria DSM 7334 chromosome, complete genomenitroreductase1e-1066.2
NC_011661:938754:940227940227940733507Dictyoglomus turgidum DSM 6724, complete genomenitroreductase3e-1065.1
NC_015574:2322811:232576423257642326276513Methanobacterium sp. SWAN-1 chromosome, complete genomenitroreductase7e-1063.9
NC_021182:1188000:120018412001841200765582Clostridium pasteurianum BC1, complete genomenitroreductase3e-0961.6
NC_011297:767333:768809768809769315507Dictyoglomus thermophilum H-6-12, complete genomeNADH dehydrogenase (h(2)o(2) forming nadh oxidase)3e-0961.6
NC_016584:5420823:542920354292035429733531Desulfosporosinus orientis DSM 765 chromosome, complete genomenitroreductase4e-0754.7
NC_017093:8518961:852667085266708527290621Actinoplanes missouriensis 431, complete genomeputative nitroreductase2e-0652.4