Pre_GI: BLASTP Hits

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Query: NC_004578:3921199:3922872 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3922872, End: 3923360, Length: 489

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019940:1963000:197955019795501980035486Thioflavicoccus mobilis 8321 chromosome, complete genomemultisubunit Na+/H+ antiporter subunit MnhE1e-1789
NC_010725:5491491:551636555163655516853489Methylobacterium populi BJ001, complete genomecation antiporter2e-1477.8
NC_012846:2299282:230596723059672306452486Bartonella grahamii as4aup, complete genomemulticomponent K+:H+ antiporter subunit E3e-1477.4
NC_008260:2992813:299965529996553000149495Alcanivorax borkumensis SK2, complete genomeMultisubunit Na+/H+ antiporter, MnhE subunit, putative6e-1476.6
NC_005956:1888500:189529018952901895775486Bartonella henselae str. Houston-1, complete genomepH adaptation potassium efflux system e4e-1373.6
NC_008783:29972:407784077841263486Bartonella bacilliformis KC583, complete genomepH adaptation potassium efflux system protein E2e-1271.6
NC_005955:1540838:154752715475271548012486Bartonella quintana str. Toulouse, complete genomepH adaptation potassium efflux system e5e-1270.1
NC_015276:565701:572882572882573367486Marinomonas mediterranea MMB-1 chromosome, complete genomecation antiporter3e-1167.8
NC_016041:2420098:242877024287702429270501Glaciecola nitratireducens FR1064 chromosome, complete genomemonovalent cation/proton antiporter, MnhE/PhaE family subunit4e-1063.9
NC_016603:3475843:348552534855253486052528Acinetobacter calcoaceticus PHEA-2 chromosome, complete genomepH adaptation potassium efflux system E transmembrane protein5e-0753.5