Pre_GI: BLASTP Hits

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Query: NC_004578:3849835:3860513 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3860513, End: 3860797, Length: 285

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:5031819:504487050448705045154285Pseudomonas fluorescens F113 chromosome, complete genomeDNA-binding protein Roi-related protein9e-35145
NC_004129:2201780:221267422126742212958285Pseudomonas fluorescens Pf-5, complete genomehypothetical protein1e-34145
NC_017986:5509569:552215955221595522449291Pseudomonas putida ND6 chromosome, complete genomeDNA-binding protein Roi-related protein3e-31133
NC_002947:3404000:341856734185673418857291Pseudomonas putida KT2440, complete genomeDNA-binding protein Roi-related protein8e-31132