Pre_GI: BLASTP Hits

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Query: NC_004578:3597083:3603136 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3603136, End: 3603267, Length: 132

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:4869673:487987648798764880313438Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPs1, transposase OrfB6e-1682.8
NC_010322:5349000:539260353926035393040438Pseudomonas putida GB-1 chromosome, complete genometransposase IS4 family protein2e-1580.9
NC_010322:5349000:538603353860335386470438Pseudomonas putida GB-1 chromosome, complete genometransposase IS4 family protein2e-1580.9
NC_017986:1885613:189951518995151899952438Pseudomonas putida ND6 chromosome, complete genometransposase IS4 family protein3e-1580.5
NC_017986:1885613:189411718941171894554438Pseudomonas putida ND6 chromosome, complete genometransposase IS4 family protein3e-1580.5
NC_010501:2609567:261866926186692619109441Pseudomonas putida W619, complete genometransposase IS4 family protein4e-1270.1
NC_015740:2614317:262149126214912621718228Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completetransposase IS4 family protein2e-1168.2