Pre_GI: BLASTP Hits

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Query: NC_004578:3597083:3597525 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3597525, End: 3598238, Length: 714

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018581:759932:778611778611779300690Gordonia sp. KTR9 chromosome, complete genomeDemethylmenaquinone methyltransferase3e-40165
NC_015976:814922:820533820533821201669Sphingobium sp. SYK-6, complete genomeputative aldolase4e-34144
NC_008278:5012000:505179550517955052451657Frankia alni ACN14a, complete genomeputative Dimethylmenaquinone methyltransferase9e-33140
NC_018581:759932:779952779952780611660Gordonia sp. KTR9 chromosome, complete genomeDemethylmenaquinone methyltransferase-like protein3e-21102
NC_015976:814922:819862819862820533672Sphingobium sp. SYK-6, complete genomehypothetical protein2e-1995.9
NC_013729:4871430:488498848849884885644657Kribbella flavida DSM 17836, complete genomeDimethylmenaquinone methyltransferase3e-1892
NC_019977:253895:2734122734122745631152Methanomethylovorans hollandica DSM 15978, complete genomeDemethylmenaquinone methyltransferase4e-1891.7
NC_012669:4118230:413545341354534136118666Beutenbergia cavernae DSM 12333, complete genomedimethylmenaquinone methyltransferase1e-1686.7
NC_009712:669647:6707536707536720391287Candidatus Methanoregula boonei 6A8, complete genomebifunctional hexulose-6-phosphate synthase/ribonuclease regulator4e-1684.7
NC_014910:1765065:179211617921161792748633Alicycliphilus denitrificans BC chromosome, complete genomedimethylmenaquinone methyltransferase9e-1477
NC_018581:3646489:365002036500203650793774Gordonia sp. KTR9 chromosome, complete genomeDemethylmenaquinone methyltransferase8e-1373.9
NC_013665:849508:8543158543158556011287Methanocella paludicola SANAE, complete genome3-hexulose-6-phosphate synthase2e-1272.8
NC_015065:18189:342723427235108837Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequenceDimethylmenaquinone methyltransferase3e-1272.4
NC_007516:2037477:2060302206030220616211320Synechococcus sp. CC9605, complete genomeDemethylmenaquinone methyltransferase-like3e-1272
NC_011892:352652:361972361972362682711Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeDimethylmenaquinone methyltransferase4e-1271.6
NC_015733:1976752:199801119980111998688678Pseudomonas putida S16 chromosome, complete genomehypothetical protein1e-1170.1
NC_011894:957897:967729967729968400672Methylobacterium nodulans ORS 2060, complete genomeDimethylmenaquinone methyltransferase1e-1170.1
NC_014258:127500:140638140638141330693Pantoea vagans C9-1 plasmid pPag3, complete sequenceputative demethylmenaquinone methyltransferase3e-1168.6
NC_015953:2681331:269576726957672696390624Streptomyces sp. SirexAA-E chromosome, complete genomeDimethylmenaquinone methyltransferase4e-1168.6
NC_015634:652000:652074652074652694621Bacillus coagulans 2-6 chromosome, complete genomeDimethylmenaquinone methyltransferase7e-1167.4
NC_015186:2165628:218785521878552188535681Acidiphilium multivorum AIU301, complete genomeputative 4-carboxy-4-hydroxy-2-oxoadipate aldolase1e-1067
NC_020911:3046916:306754330675433068232690Octadecabacter antarcticus 307, complete genomehypothetical protein1e-1066.6
NC_016023:579000:602240602240602860621Bacillus coagulans 36D1 chromosome, complete genomeDimethylmenaquinone methyltransferase2e-1066.2
NC_013093:4890557:490029249002924900882591Actinosynnema mirum DSM 43827, complete genomeDimethylmenaquinone methyltransferase2e-1066.2
NC_014391:1910273:193815719381571938861705Micromonospora aurantiaca ATCC 27029 chromosome, complete genomedimethylmenaquinone methyltransferase2e-1066.2
NC_010511:3947948:395954139595413960167627Methylobacterium sp. 4-46 chromosome, complete genomedimethylmenaquinone methyltransferase3e-1065.5
NC_016582:93754:974799747998117639Streptomyces bingchenggensis BCW-1 chromosome, complete genomedimethylmenaquinone methyltransferase5e-1064.7
NC_020133:3787844:381152538115253812184660Mycobacterium liflandii 128FXT, complete genomeDemethylmenaquinone methyltransferase6e-1064.3
NC_008146:2744612:2772982277298227745111530Mycobacterium sp. MCS, complete genome5-carboxymethyl-2-hydroxymuconate delta-isomerase1e-0963.2
NC_008705:2763131:2790870279087027923991530Mycobacterium sp. KMS, complete genome5-carboxymethyl-2-hydroxymuconate delta-isomerase1e-0963.2
NC_015137:2616222:262897226289722629649678Burkholderia sp. CCGE1001 chromosome 2, complete sequenceDimethylmenaquinone methyltransferase3e-0962.4
NC_014974:1076565:108607210860721086740669Thermus scotoductus SA-01 chromosome, complete genomedimethylmenaquinone methyltransferase4e-0961.6
NC_015873:790961:800227800227800916690Megasphaera elsdenii DSM 20460, complete genomedimethylmenaquinone methyltransferase7e-0960.8
NC_013526:439813:476172476172476915744Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomedimethylmenaquinone methyltransferase1e-0860.1
NC_007951:2233676:223367622336762234383708Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative dimethylmenaquinone methyltransferase2e-0859.3
NC_015145:3657103:367218536721853672874690Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeDemethylmenaquinone methyltransferase2e-0859.3
NC_015422:4395388:4405501440550144067901290Alicycliphilus denitrificans K601 chromosome, complete genomeDimethylmenaquinone methyltransferase3e-0858.9
NC_010086:1816378:182093918209391821637699Burkholderia multivorans ATCC 17616 chromosome 2, completeDimethylmenaquinone methyltransferase3e-0858.5
NC_014910:4026613:4037233403723340385221290Alicycliphilus denitrificans BC chromosome, complete genomedimethylmenaquinone methyltransferase3e-0858.5
NC_014910:1050706:105552010555201056194675Alicycliphilus denitrificans BC chromosome, complete genomedimethylmenaquinone methyltransferase4e-0858.5
NC_009512:1518113:153624715362471536885639Pseudomonas putida F1, complete genomeDimethylmenaquinone methyltransferase5e-0858.2
NC_012660:4734363:473569747356974736362666Pseudomonas fluorescens SBW25 chromosome, complete genomeputative aldolase5e-0858.2
NC_015389:616430:635976635976636683708Coriobacterium glomerans PW2 chromosome, complete genomeDimethylmenaquinone methyltransferase7e-0857.8
NC_008786:2687688:270369327036932704358666Verminephrobacter eiseniae EF01-2, complete genomeputative methyltransferase1e-0757
NC_012792:1091669:110844111084411109112672Variovorax paradoxus S110 chromosome 2, complete genomeDimethylmenaquinone methyltransferase1e-0756.6
NC_016048:3899878:391144839114483912131684Oscillibacter valericigenes Sjm18-20, complete genomealdolase2e-0756.2
NC_014817:29795:322763227632965690Asticcacaulis excentricus CB 48 chromosome 2, complete sequence4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase2e-0755.8
NC_015458:1692401:170369917036991704172474Pusillimonas sp. T7-7 chromosome, complete genomehypothetical protein3e-0755.5
NC_018581:759932:779297779297779950654Gordonia sp. KTR9 chromosome, complete genomeDemethylmenaquinone methyltransferase4e-0755.1
NC_015727:1076927:108099210809921081660669Cupriavidus necator N-1 plasmid BB1p, complete sequencedimethylmenaquinone methyltransferase MenG1e-0653.5
NC_009511:2726296:274098727409872741685699Sphingomonas wittichii RW1 chromosome, complete genomedimethylmenaquinone methyltransferase2e-0652.8
NC_010505:3690000:371358537135853714232648Methylobacterium radiotolerans JCM 2831, complete genomeDimethylmenaquinone methyltransferase4e-0651.6
NC_012522:3038890:304859130485913049262672Rhodococcus opacus B4, complete genomeputative 4-carboxy-4-hydroxy-2-oxoadipate aldolase8e-0650.8